Gene detail

Detailed information of ENSQPTP00000021062.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031552562.1, uncharacterized protein LOC116289757 [Actinia tenebrosa]
Species Actinia mediterranea · all data for this species · gene families

Sequence

CDS

Transcript

ENSQPTT00000025812

TTCACAATTTGCTGTATTTGTTCCACAAGGTCTTTATTCCCACGAGGAGATTCCATGGTTTGTATCATCGATGACAGAACTGACGTATGGAATAACGCGCCTAACCTCAGCAAAGTCAAATCTTACCAGTAATTTAAGGGAGTGGGTGACATCAATGCTCCAGCAGACAAGCAGAACGAGACAACATCGtctcttgaaaataatgatgttggatatgaaaataaaaagaaagatgaaaaGGACGAAGTCAAAGACGACAACACGAGGCTGAGTCTGACAGTAAGGATAACGAAATAAAGATGGAACTGGAGAAGGATGAGGATGATCCTTTGAAAGATGGAGGTACAGAAATAGAGAGGAGTTCAAAAGAAACTTGTGTGGTCAAGGAAGACGAGAATAAAAACTGCAGCAGTGGTAACGTGAAAGTTGACTGTTCTGTTGATTGTGAAGTTAGTGCTATTGCTTTAAAAGATGCGAAAGATGCTGATGATATTGCAGAAGAAAACGAATGTGGTTTGAAAAAGGGCGCAAAAAATGAAGTTGAGAAAATGAAAACAGATGAAGATGCCTGGCAGGATTGCACAAGTAGTTCCTGCATTCCAGAGAAGCAAAATGGCGAAGAGCTTAGCTGTGTAAGTGAAAAGAACTcacaagaaaatgaaacaaaagttAATGAAGAAGAGAAAAGCCAAGTCAACGAggaaatatctcaagaaaagGAAGACATAAACAGTAATAAAGATGAAAGTGTTGAGGAGGAAAAATCTCGACAAGAGAATTCTAAAGAGATAGAAATGGAAGACACCGTCAAAAACAGTAATGGAGATGAAATTGCCAACGAGAAGAAATCGgaacaaaatatttctaagGAAAACGAAATGGCAGAAAACCACAAAAACGATAATGTCGCTGAAGCTGTTGAAAAAAAGAGATCTGACCAAGATATTtctaaagaaaatgaaatgaaagaaaacgactggaaagaaaaggaagataaCAATACTCAAGGTTTCAAAAATGGAGCCATTGGAAAAGAAGAATCGAGTACCGAGAAGAAAGACGCGGCGACTGCGGACGAGACTGAGAAGTTTGTCCAAAACGATGATGACGACTACCTTGTTCATCTCGAGGACATCTTGCGACGAATCCACCAGAAATTCTACGATGTTGTTGATCAAATCAAGGAGTTAAAAACCCAAAACCTCAAAGAAGATTCCAGTATAACTCGATTCTGCAATTCAGACACCCTGACACCGTGCACAAAACAGATAATAAGAGAACTACGTTCAGAAGTATTAAAAGGAGTCAATGTTGCATTTACTGGAGTGATACCAACCAACATTCAGCCCGAGAAAAGCGAGATTTGGAAACGTGCTGAAGAACTTGGCGCCAAACCACAGCGTCACGTGGTGTGCCCTAAAGACACAACCGACCCAGCTGACGTCACAACACACGTGATTGCTGCGCGTCTTGGTACAGAAAAGACATATCGCGCCATTAAGACACCCGGTATTAAACTGGTTAAACTGGATTGGCTTTGGAGCTGCTCAGAGAGATGGGAGTGGGTCGATGAAAGGTTGTTTCCCGTTGATGGGATAGACAAGTATAAGAAAGATGTTCGGAATCAACGCACGCCCCAAGGAACGCCGCAAAGCTGGAAGAGAACCGCGAAAGACGATAATAAAAACGATAACAAACAAACTCCTTCACTTGAAGTCGAAGTTGGAGTAAACTCTAACGAGGGCGCGCGCGAGAGAACTACTTCGTCAAGCAGCGCGGACCTTTTAATGGCTTCCATACATCCTTTACTCTCTTTCTCCTCGACTGAAATGGAAGCCATGGACAAGGAGGTCGAGGACTTGATGAATTCAAGCGAAGACGAGAGTGACGTAATCGGTAGTATTTCTGGATCAAGTAGTTCGTCGAGCAGCTCGTCCAGTTCGAGTTCCAGTAGCTCGAGCTCATCTTCTGAGGAATCTGACGATAACGACGAAAAGGATAACGTAGATGAACCCTTAAAGAAACGAAAATTAACTGACAGTGAGAGTGATGATATTCTAACAAAGAAGCGTAAAAAAGACATTGATTTAGCATCAGAAGAACTGCAGGATCGGTTAACTCCAAGTGATGgggatggcgatgatgatgatgatgatgatgatgatgataccaATAATGATATGGCAGCTTTACTAGAGGCAGAACTATCGCACTACTAATTTTAGTTGACTTTTCCGTACATTTTTAGCATGTCAAATCCCTTTAGTAACTTGATTTACGTTTATGGTTTTTCATAGAGTTTGCGCAAGTGAACGGAGCGGAGAAGAAAACCAAAAATTAGCCGTATCATCGTGAATCTTTTTACCGTGTTTTCCTCTTTCTTCCTGTATGTATCCAGCGTCTTCAGTTAACACTGTCGACCAgaaaattcattcattcgaAAAAGAACACTTTTTCAGCTTCCTGCAACAGTCTTCACTCTAAAACAACGAATGCTGTTGTGAAACGTTTGAAGTCAGGAGTTGTTACTTCTGGTATCTTACGGTTTCGTAATTCGTGTTCAGTTTTTTCGACTTTCATGTGAGGTAGTCGTCATTTTGGTTTATTCCAACGAAATTGCCTCGCCATTGGCTACTTTTGCTTTATCCACCAACATGCATGGCTTCtatgtatttttgttttttcattttcttggaAATAATTGCGACCCAGGAATTATTATCAATTCATTAACAACATCTAGCTCTTGCGACAGACTTTGTAATAGGCTGAAGATTTGTCGTACTCATGTCATCGACTCCCCGTTAGCTAATAACAGcctgagagagaaaaatatataacccAGGGTACGTGGACTAAGTGTTCACACGACTAAACTAAAGATATTGTAAATAGAGATTATATATTGACCActgcattctttttttttacttaagcATCCCGAAATGTATGACAAAACACGTACTTAGTACCAAGTCAGTAACgaaaaatatttgttataAAATCGCAAATAAATTCGTATGTTAAATTGAGTTTTCGAAAATAAGTTTGGAAGTAACAGTTGAATATACCAAGCCTCATGGGGCAACCAAAATGCGCTAGTGCCAAACCCCTCTTCCTTAGAAGCAGGCGTGGGTTAGTAGGCGGCCTTCAGAGCTTAGAGGTCTACGGTTCGATCCTCAGGATCTTTCTAATCCGTTTAGCTTTGAATATCCTTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7TSG2	RNA polymerase II subunit A C-terminal domain phosphatase OS=Mus musculus OX=10090 GN=Ctdp1 PE=1 SV=1
Q9Y5B0	RNA polymerase II subunit A C-terminal domain phosphatase OS=Homo sapiens OX=9606 GN=CTDP1 PE=1 SV=3
Q9P376	RNA polymerase II subunit A C-terminal domain phosphatase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=fcp1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007068 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00533 all species →	BRCT	BRCA1 C Terminus (BRCT) domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036420 all species →	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR001357 all species →	Domain	BRCT domain	Interproscan
IPR039189 all species →	Family	CTD phosphatase Fcp1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23081 all species →	RNA POLYMERASE II CTD PHOSPHATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008420 all species →	Molecular Function	RNA polymerase II CTD heptapeptide repeat phosphatase activity	Interproscan
GO:0070940 all species →	Biological Process	obsolete dephosphorylation of RNA polymerase II C-terminal domain	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15732	CTDP1, FCP1; RNA polymerase II subunit A C-terminal domain phosphatase	EC:3.1.3.16	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.