Gene detail

Detailed information of ENSQPTP00000022835.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031564089.1, small nuclear ribonucleoprotein-associated protein B-like [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P27048	Small nuclear ribonucleoprotein-associated protein B OS=Mus musculus OX=10090 GN=Snrpb PE=1 SV=1
P17136	Small nuclear ribonucleoprotein-associated protein B OS=Rattus norvegicus OX=10116 GN=Snrpb PE=2 SV=2
Q58DW4	Small nuclear ribonucleoprotein-associated protein B' OS=Bos taurus OX=9913 GN=SNRPB PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007246 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01423 all species →	LSM	LSM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017131 all species →	Family	Small ribonucleoprotein associated, SmB/SmN	Interproscan
IPR047575 all species →	Domain	Sm domain	Interproscan
IPR001163 all species →	Domain	Sm domain, eukaryotic/archaea-type	Interproscan
IPR010920 all species →	Homologous_superfamily	LSM domain superfamily	Interproscan
IPR050914 all species →	Family	Small nuclear ribonucleoprotein-associated SmB/SmN	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10701 all species →	SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND N	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005682 all species →	Cellular Component	U5 snRNP	Interproscan
GO:0005685 all species →	Cellular Component	U1 snRNP	Interproscan
GO:0005686 all species →	Cellular Component	U2 snRNP	Interproscan
GO:0005687 all species →	Cellular Component	U4 snRNP	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0046540 all species →	Cellular Component	U4/U6 x U5 tri-snRNP complex	Interproscan
GO:0071004 all species →	Cellular Component	U2-type prespliceosome	Interproscan
GO:0071013 all species →	Cellular Component	catalytic step 2 spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11086	SNRPB, SMB; small nuclear ribonucleoprotein B and B'	-	DNA replication proteins	ko03032	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.