Gene detail

Detailed information of ENSQPTP00000025166.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031554878.1, ribonuclease H2 subunit B-like [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

Transcript

ENSQPTT00000030737

ATACCCAGAGCATCAGTAATTTTTGGCGCGTTTTCTGTTCAACTTCTTGTGTTTACGTAGTGAagtttttaacattaaaaaaatgtctcaaggaaagaaaaaggaaaaatctcCAAGTCAAGAAAAGACTCAATGGATCTTGATAGCTCCTGAAACGGCTCTGAACGGCAGTTCAGATGGTAAGGACGATGAACCAACGTTTGTGAAGCTGTTACACCCAAGAACAGaGAAAGAATGCATGTTCTTAATGTCAAGAAATAAAGATGCCGTGTATGAAATTATGAAGTTTGCAGAGGGGCCCAGATCATGGTTCATTGAGGACTCAGTCCAAAAGGatgGCAGTCTTCTTGTCACCACTTCAATTGATCCAATATTTCTCTGTATACCATACCTCACGAGGAACAAAACAAAGttcAGGACAATAGATCAAGTTCTAATGGATGATGATTACCCTGCCGTCAGTAGCTTGTCTATGTGTGTGTCATCTGACGTACTTAGTAATGTATGTGACTGCAAAGGTAATGACGATCTACAGGCTTACAGGCTAAATGAGGATAAACTAATAGCTTGGCTTAAAACAAAGGTGGAATGTGTGGCAGACAAACTAGAGTCTTCAAAAATCAACGTGAGCAAAGGTTCCCAAAGTGCCACATTTGTACGTAGCAAGTTACAGTCCAATGTAACTAGAGatGATTATCTCAGATATTCTTGTGGCATCGTGTGTCAGTATCTTAACTCTTCATGGGCTGGCAAGCTACAGGCTGCATTAAATTTGCCAGAGGAAAAAACAGTTCTGTCGTCGCCAGAAGAACCGCCTAGCAAAAGGACCAAGTTAAATAATGATGCAGGGACGGTCTTAGAGGATTATTCTAAAGAATATGAgaagataaaaacaaaaactacttcaaagACCCCAGGAAAAATGACGGCAGCACAGAAGAGTTTATCAAAAGTCAACAAGAATGGAATGAAGTCAATGGCATCTTTCTTTactaagaaataaaattcaaCTCTGTGTCTATATCGGTACGGACTTCTACatgtaaatattgtaaagaAAGGACAAAGCCACAAAAGGAATTCTTGCATGTACAAGAACTAATGGGTTGCTGTCACTCCTTGTACATGGCTTGAGACAGTGTCTGTATGTCATTGTAGGGTGGTAataagattcattcagctgattgataccaagtaATACTCTCTGACGATAGCTCATGATAGAGAGCATTCATTTGTTATTGTGTAGGCTGGTACTGAGATAAAGATTTGTTCAgttgattgataccaagcaatagaggttttgcaccatcacatgatggcaggCATGTTAGATgccaggaacaatacaatctcTTTACAGGAggaagaattcaattcccaagagcaaaggaattttattgttctgccatctagccacaggcagtccaagctgtattatgggcatGGGCACATGATGATGCAAAACTGCCAGTCTCTTTCCCATTGGGCTTAGTGTTCTCCCATTTCATATATCtcagagaataagattctttgcttGAGTTGCATCCCATATTAATATAATCCCAAGTTTTAAAGgtgaaaaaataatactcaagggaatgattgATATGTAAATGATATTTTGACTGAAATGAGAACATAAATTCAACCCTACAAAGTAATTAATAAGCCTATTTACAGagttaaaactatttttgaaCAGTGTATCATAATTCTTGttaaaaaactttattttttcttttataaaaagtGAACGTCAAatgtatttataatatattctttGGTCTAAATTTCACATTCATTTAGTGAATCACGTCTTTCTATCTATAATTTTGATATGAAGATTCCTATTGTGTGTAGTCTAATGAAATTTATTCTAAtgtatgtgtttgtaaatAGATGACATTTTGAATACAGTTTGAGTCTTATAATCTCAAATTCCTCTAGTTATCTGGATCTTCCTCTTATCTTGAACATGATTCCACATTCCTTGGACTCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5HZP1	Ribonuclease H2 subunit B OS=Xenopus laevis OX=8355 GN=rnaseh2b PE=2 SV=1
Q28GD9	Ribonuclease H2 subunit B OS=Xenopus tropicalis OX=8364 GN=rnaseh2b PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006988 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17745 all species →	Ydr279_N	Ydr279p protein triple barrel domain	Domain	Interproscan
PF09468 all species →	RNase_H2-Ydr279	Ydr279p protein family (RNase H2 complex component) wHTH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040456 all species →	Family	Ribonuclease H2 subunit B	Interproscan
IPR041195 all species →	Domain	Rnh202, triple barrel domain	Interproscan
IPR019024 all species →	Domain	Ribonuclease H2 subunit B, wHTH domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13383 all species →	RIBONUCLEASE H2 SUBUNIT B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0006401 all species →	Biological Process	RNA catabolic process	Interproscan
GO:0032299 all species →	Cellular Component	ribonuclease H2 complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10744	RNASEH2B; ribonuclease H2 subunit B	-	DNA replication proteins	ko03032	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.