Genomic Location: chr5:4785164...4791085
NR annotation: XP_031553384.1, uncharacterized protein LOC116290483 [Actinia tenebrosa]
Species Actinia mediterranea · all data for this species · gene families
ENSQPTP00000026893.1 in AMEDI (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q0P5F3 | Protein lin-7 homolog C OS=Bos taurus OX=9913 GN=LIN7C PE=2 SV=1 |
| Q5F425 | Protein lin-7 homolog C OS=Gallus gallus OX=9031 GN=LIN7C PE=1 SV=1 |
| Q9NUP9 | Protein lin-7 homolog C OS=Homo sapiens OX=9606 GN=LIN7C PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007541 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF14622 all species → | Ribonucleas_3_3 | Ribonuclease-III-like | Family | Interproscan |
| PF00595 all species → | PDZ | PDZ domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000999 all species → | Domain | Ribonuclease III domain | Interproscan |
| IPR051109 all species → | Family | Membrane-associated multiprotein complex regulator | Interproscan |
| IPR036389 all species → | Homologous_superfamily | Ribonuclease III, endonuclease domain superfamily | Interproscan |
| IPR001478 all species → | Domain | PDZ domain | Interproscan |
| IPR036034 all species → | Homologous_superfamily | PDZ superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR14063 all species → | PROTEIN LIN-7 HOMOLOG | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004525 all species → | Molecular Function | ribonuclease III activity | Interproscan |
| GO:0006396 all species → | Biological Process | RNA processing | Interproscan |
| GO:0005911 all species → | Cellular Component | cell-cell junction | Interproscan |
| GO:0007269 all species → | Biological Process | neurotransmitter secretion | Interproscan |
| GO:0016323 all species → | Cellular Component | basolateral plasma membrane | Interproscan |
| GO:0045199 all species → | Biological Process | maintenance of epithelial cell apical/basal polarity | Interproscan |
| GO:0045202 all species → | Cellular Component | synapse | Interproscan |
| GO:1903361 all species → | Biological Process | protein localization to basolateral plasma membrane | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
ENSQPTP00000026893.1.Genes whose expression across the transcriptome samples of Actinia mediterranea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Actinia mediterranea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
