Gene detail

Detailed information of ENSQPTP00000027226.1 in Actinia mediterranea

Genomic Location: :...
NR annotation: XP_031551072.1, TNF receptor-associated factor family protein DDB_G0277243-like [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSQPTT00000033339

aaaatgtaattcCCATAAAATTAGGTTAAGATGGGCTAAAGCTAAATCCCCCCCGTCTCCGTAGTCCACGTTCGTTACTCAAAGCAGTGGGTCGTGGAAGCTTAAACTGTAAACACGCCGGATAAGTCGACCTTAGTTGTTTCGCATGACTTGCATGCAAATATTCATTATCCCCATGCAGTTATATAAAATACTTCGAGGCGTCTCAGAAGCCatatttattcaataaaattaataaatggGCCACAAAGTTGAACAGTTCGTGAAAGATATCGACGAAAATCTCATTTGCCCAATATGCAAAACTGTATTCGAGGATCCCGTGATATGCAAAGACGGGCACTCATTCTGCAAAGAATGTATTGACCAGAGGTTGAAGGAGAACAAAAAATGTCCAGTGGATGGTAGAATGATAGATAACCAGACCTTTTCACGTAATTTTGTCCTCTGTGGTATCCTGGAGAAACTAGATGTATTTTGTCAAAGACTACACGAATCAAAAGGTGAAAAAGATGTTCAACAAACTTGTGAATGGATTGGGAAACTACATTCACTCGCCAAACACAGAGAAACTTGTCCTTTCCAACAAGTACAGTGTCCTAATGTGAACTGCAACTCCAAGCTGCAGAGAAGAGAATTGGCTAACCATGAGAAAGTGTGCCGGTTTAAAAACGTTTTATGCGAGGAATGTCAACTTGGTATGGTTCTACACCAAGTCGAGAAACACAAAGAGTACGATTGTCCAGAAACACTGATTCTTTGCCCTAACGAATGTACTGACCCACAAGGAATGACTGTAAAGATTAAGAGGAGCAAATCTAAAATACATCTAGCAAACAACTGCAAAAGAACAGCCATCCATTGTCCATTCAAGGATCAGGGATGTTCAGTCCAAGTTGAACGACAACATGTCGATAAACACGTACAAGACAACATGGCACCACACATGATGTTACTGGCCAAACAATGTTCATTGCTCACTATAGAAAACCAAGTTCTATATAATGAGCTAAAGAAAACGAAGAGAAAAATAAGTGATCTTGAAATCGAAGTGATAAGCAGAAATCGCTATGTGTGGACAATACTGGACTTTCCCACTCAAgccaaaaaatacactcaagGCACATGGATGAGGAGTCCAACCTTCTGGTTGTGTGGCAGCTGCTGGTTTCTGAAGTTGTACCCTAATGGCCGTGACAAAAAGTCCAAAGAATTTGTCTCATTATGCCTTGTTTTAAGTGACGAGGATAGACTTGTACGAACTGGAAAACCTTTTATTGTAGCAACAAACGAAGTGACTGTGGCATATGCAAGaatAACTGTAAAAAGCCAGTCTCAAGCAACATCCATAACACATGACGTAACATTAAACCCAAAGTTTGAATCTACTGGCGTAGTCAGAGAAGTTGCTGTGATCAGCGAACTGATGAAAGCAAATGAAGCACGTTCTCCAGATTTTTGCAGCGTAAAAGATGGTTGTTTTACTGTTACATGTATTCTCTTTTAAAGGTCAACTGGTTCAGAGACGTGCAGTAAAATAATctaaaatcactgaagcaaAACCCTTTCTTTCGATTCCACCCATTATtactatcattttttttttactaaactGAAAAACGACATCTTAAAAGTATAAATTTGTTAGAAAtttccaatccaatccaatcaaaTGCAATGCGAtgcaatccaatccaatccaatctaATCCAATTTTTAGCCCAATCTAATCCATTCTAATCCAATCCAATCTAAACCAATCCAATGCAATttaatccaatccaatccaatctaatttaatccaatccaatctaatccaaaaaaatttaaatcattttttaattatttccaATCCCATCCAATTccattccatcccatcccatcccatccaatccaatccaattgaTTCCCAATTGATTCCCAaagcaatgcaaaatacaaaatgatgaatttctttgtcagtaaattggcatttgtagatgtttttgagtattttttttaacttttttaaagtgaaagacaaggtctttatacaaaataaatgaatggatcaTAAGTAGCGTGCGTCTAGCTACTTATGATCCATTGCTTTATAATATAGTCAAGTCAACAAACAATGACTAAATTAATGGCAAAAATTTAGCTTACGAGTGAaccaaaaatgttcaaaactacGGAGACAGTCGGATTTTCAACCGTAagaagtacatttcaaatgaTAACTTATCATTATCATACAGTAATGCCaagaaaatcaatgaaaaatacagtggctttctttgttgttgttgacgatGTTAAAGTTTATTTATAT

Protein

Uniprot

Gene family

Uniprot term	Description
Q9H4P4	E3 ubiquitin-protein ligase NRDP1 OS=Homo sapiens OX=9606 GN=RNF41 PE=1 SV=2
Q8BH75	E3 ubiquitin-protein ligase NRDP1 OS=Mus musculus OX=10090 GN=Rnf41 PE=1 SV=1
Q5R7T5	E3 ubiquitin-protein ligase NRDP1 OS=Pongo abelii OX=9601 GN=RNF41 PE=2 SV=1

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|U-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02176	zf-TRAF	TRAF-type zinc finger	Family	Interproscan
PF13923	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR008974	Homologous_superfamily	TRAF-like	Interproscan
IPR003613	Domain	U-box domain	Interproscan
IPR002083	Domain	MATH/TRAF domain	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001293	Domain	Zinc finger, TRAF-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10131	TNF RECEPTOR ASSOCIATED FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan