Gene detail

Detailed information of ENSQPTP00000027439.1 in Actinia mediterranea

Genomic Location: :...
NR annotation: XP_031557296.1, eukaryotic initiation factor 4A-I-like [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSQPTT00000033599

GTGCATACGATATATCCGTAAAAAAGTTTGTAAGAAATTACACTAATATTCACAAATTATAAGTTCAGTagagacctcagtagaccgtgTAAATGATGCTGGCCATGAGTAATGTTTATACCAActattcatttgttttgaaagCTGAATATAAACTTGTGTAATGttatgggattcctgtgtgaAGGCGGAAATGATGTGACGTCAGGGGCTTAGCGAATGGATCAATTCATTGTACCCCCCTTTAGGGCCCATCCGGCCTTTCTCGGCCTTTTTCCCGCTGCTATATTTCATGCAACATGTCTCGCGAAGGAATAAATGAATCAAGAAAAGACCAGGAGGAGTTTGCAGATGGAGGGCCAGAAAGAGATACAGTTGGAGATATCGAGTCAAACTGGAATGAAGTCTATGATAATTTCGATGACATGAACCTGAAGGAAGCTTTACTTCGTGGTATTTATGCTTATGGATTCGAAAAGCCTTCTGCTATTCAGCAAAGAGCGATCGTTCCCTGTTGTAGAGGAAGAGATGTGATTGCCCAAGCTCAGTCAGGAACTGGTAAAACAGCAACCTTTGCTGTGTCTATCCTAGAAAAGATTGATCTTGATCTAAAAGAATGTCAGGCTTTAGTCCTTGCTCCAACCAGGGAGTTGGCGCAACAGATTCAAAAGGTAATCTTAGCTCTGGGAGATTATTTGAATGTCAAATGTCATGCCTGTATTGGTGGTACTAATGTAAAGGAAGACATGATAAAGCTGAGATCAAAGCAGAACCAAGTTGTTGTTGGTACTCCTGGTAGAGTCTCTGACATGATTGAAAGAAATTGTTTAATAACTGATCACATCAAGATTTTTGTCCTTGATGAATCTGACGAAATGTTGTCAAGAGGCTTCAAGGATCAGATCTACAAGGTTTTTAGGAAACTCCAAAGTGATGTACAGGTTATTCTGCTCTCTGCAACAATGCCTGAGGAAGTCCTTGAGGTAACTAAAAATTTTATGAGAGATGCAGTCCGCATCTTGGTGAAGAAGGAGGAACTAACCCTCGAGGGTATCAGGCAGTTTTATATTGGTGTTGAAAAGGAGGAGTGGAAATTAGAAACATTGTACGATTTGTATGACACTTTGACTATCACCCAAGCTGTGATATTCGTTAACACAAGACGAAAAGTGGACTGGCTCACAGAAAAGATGCTCTCCAAAGACTTCACAGTATCTTCTGTGCATGGTGATATGCAGCAAAAAGAGCGTGACACCATCATGAAGGAATTCAGATCTGGATCAAGTAGAGTCTTGATTACTACTGATTTACTGGCACGTGGCATAGATGTCCAGCAAGTGTCATTGGTTATAAATTATGATTTGCCAGGCAACAGGGAGAACTACATTCACAGgaTTGGTCGTGGTGGTCGTTTTGGACGTAAAGGTGTTGCTATCAACTTTGTGACAAAAGATGATGTGCGTACAATGAGAGATATTGAGACATTCTACAATACAACTGTCGATGAGATGCCAATGAATGTCGCCGATTTAATCTAATTGGATGTGACgagaaaattattaaaaatagaGGTTCAAAAAAAAGGGAGGAAAAAGCTCCAACCGAGATAACGAAAGAGCccattgaagaaaaaaattgaaaacttgtAAAAAAAGCCACAGCAGTTGGTTATGCAAAATGAAAACCTCATTTAAttcatgttgcatgttgaaaGACAGTAAATACGATGAAGTTGATGGTTGTATGTTTTATGATCTTGCTTTGTTTCTTTTCACAGTCAATTTTAGAAGCAAAAGATTAGTCATTCTCAATTCTTTTGCGATAAACAAATGGatgatgggcttcctgtgttaagaAATACTAAGAACTAGTCTCTCTTGtctacaggaagcccatataAACTAAATATTGAGAGTTATTTTGAGATTGTCGCCTTGGAAGATAGCCTCTAAAATCACGTGAATTATATTTTTCGGCTTTGCTATGTGTACCTATGTGTACTGTGTAGATGACTCCCATATTTAGCTAGAAAAACTTTTAGTGTATATCATgataatcaaaaataaacacTTCACAGgtttattctttttcttatatATTTATCAACTCGCTTATGCATGTTCAATAATTTTCTATGGCCTGTCAGAGGGTTTGGCTGATTTTAACTTGCCTGATGACTTTGTAATAGTCcattttcgaattccaaattaccgctgtgttccttgattacagactcatttgcacagggttagcctcgtatcagtgtttaaatattcacaaataccaacagaaaagtaaagaatgcacaacttcaacaatacaaacattttgaaactcgacggaccttgactggaacacgtgaatattctgcacaaactcgagactaaccctgtgcaaatgagtctgtaatcaaggaacacagcggtaatttggaattctaAACGGGTCTATCGTTTCTACTAAAGATAAATAGGAGAAAAATCAGAGTATAAGACGTAAGCAAACTATAATCATTTTCATAATGTACCGCAAACGTG

Protein

Uniprot

Uniprot term	Description
Q3SZ65	Eukaryotic initiation factor 4A-II OS=Bos taurus OX=9913 GN=EIF4A2 PE=2 SV=1
Q8JFP1	Eukaryotic initiation factor 4A-II OS=Gallus gallus OX=9031 GN=EIF4A2 PE=2 SV=1
Q14240	Eukaryotic initiation factor 4A-II OS=Homo sapiens OX=9606 GN=EIF4A2 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR044728	Domain	ATP-dependent RNA helicase eIF4A, DEAD-box helicase domain	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47958	ATP-DEPENDENT RNA HELICASE DBP3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03257	EIF4A; translation initiation factor 4A	-	Exosome	ko04147	deepkoala