Gene detail

Detailed information of ENSQPTP00000027602.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031568904.1, U2 snRNP-associated SURP motif-containing protein-like [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

ENSQPTT00000033803

CCAATTAATTCAGACAAGAAGACTTTACCGTGGGGTTTATCAGCCGATGGATTGACTCCAGGTTCAATGAAGACTTTGACTGGAGACAAGTTGAAAGCGTTTTCAAGTGGTACAATGAATGCTGCTGCAAAAAAGGCGGCTAAAGCCAAGCAAGAGttagaagaaaggaaaaagAGAGATGAGGAGAAATGTGCAGAGGTATTTGCAGATTTTGTGGCTTCATTTGAGGACTCAAGAGCAAAGGGCAAGACATTTGTCCGTGGAAGCACCATCAACCCAGACACAAAagTTGAAACTAAATCTGATGATTCTGGAAGACTTTACAAACCAATGGCTAAACTTAGTTCTGCTGTAATGGAAGAGAAAATAAAGACAGACACACCACAAAAATTGGatatgaaaaagaaaggaaaagaaaaggagaaaaagaaaagtaacCTTGAACTTTTCAAAGAAGAATTAAAAAGGAATCAGCAAGAGAGAGAATTAAGacataaaatcaaaaaaggaGACATAACAGACATACCAAGTGATGTGTTGAGTGCTTTACCAGCTTCATTTCTTAACACACCTAAATCTGATGATCCATATGCAACTGGTTCACACGATACAGGAGATCCTAACactacaaatatatatattggaaaCATTAGCCCAAAGATGAATGAAGAGGCATTGATGAAGCTCTTTGGAAAGCATGGCCCACTGGCAAGTGTAAAGATCATGTGGCCTCGGACTGATGAAGAAAAATCCAGGAACAGAAATTGTGGTTTTGTCGCTTACATGAGACGAAAGGATGGAGACAGAGCAATAAAGGAACTTGGAGGCAAAGACATCATGGGGTACGAAATGAAATTagggtggggcaaagcagtgCCACTCCCCCCACACCCCATATATGTCCCCCCTGAAATGGAAGAAGACAACACTCCTCCACCCCCCTCAGGACTGCCATTCAATGCTCAGCCAGATAAACACTCCACAAAGGATGCCCCTATTGAAGACAAAGATCTTCTTGACCCTAATGGTTTTAATAAAGAGGTGAGCATGACTCTTCACTTCCTTGTCATTATGAATACTTTGGAGAACAGAGTCAAATTCTTGAACTTGCTTTGCTGTATTCACCGTGTCATAGAGTTTGTGGTGCGTGAAGGACCAATGTTCGAAGCCATGATCATGAACAGAGAAATCAACAATAATATGTTCAGATTTTTGTTTGACAACCAATCCCCTGAGCACATCTATTACAGATGGAAGCTGTTTTCTATACTACAGGGTGACTCACAAACAAAGTGGAGGacagaaaaattcaaaatgttttgtaatGGTTCCTGGTGGCAGCCTCCATCGTGTACGCAGTATAGTGTAGGAGCATATACGATAGCTTCAGCCACAACAGTATCCAAGCAAATAGATGAAACCCCTCCAGAAAAGGTGACACCAGCTAAACCAGTGGAGAGAGAAATTTCTGTACCAAGCACCACCAGCAGTAAGGACAGGGACAAGAAATTCAATTTATCATCAAGGCAAAGAGACAAGCTTGAAGACATgctaaggaacctaacgatAGAGAGATCCAAGATAGCTGATGCTATGGTGTGGTGTCTGGAGCATGCTGACTCAGCTGATGAGGTTACAGAATGTATAAGTGAATCTCTGTCGCTCCTGGAAACACCTCTTCAAGTGAAAGTTGCACGTCTCTATCTTGTGTCTGATATCCTCCACAACTGTTCGGTCAAAATTCCTAACGTGTCCTACTTTAGAAAGGGATTTGAAACAAGACTAAAGGATATATTCGCAAATTTAAGTGCAGCTTTTAAAGCAATAAAAGCGAGGATGAAAGCTGAACAATTTAAGAAACAAGTGATGAGATGTCTTTCTGCTTGGATGAGCTGGGCTGTCTATCCTCCAGACTTTCTAGTCAACTTACAGTGTAtatttcttggccagattgaCAGCAATGCTGGTTTATTTGGGGTGAACCATAGCTCGAACTTGGATCGcaaaccatttgcagatgttgACGGGGCTCCTCTAGATTTGGATGGAGTCCCCTTGAAATCTGAAGAGATAGATGGGGTGCCTCTGGAAGAAAGTGCCCTAGACGGTGTTCCACTAGCGAAGGAAGATATTGATGGAGTACCCAGTATTAATGAGGAAGATTCGCCATCAAAAAATGACGAATCGTCACTACAAGCACAGGATAAGTCCTCTCGCGCAGCCGAGATAGACGAGACCAGAAGAAGAAAGCTACGGGAAATCGAGCTGAAAGTGGCCGAGTATGCACAGAAACTGGAAGCTAAAGGCAGCCGCAAAGGAGGGAAAACTAGCAAGGACATCGCAGAACAGTGTGACCAGTATAGAGCTAAGCTACTTGAGGCTATCGAACCAAAAGGGAAGCGCTCAAGAAGGTCCAGGTCGCGCTCTAGGTCACCACCCAGGAGGAAACGGCGTGACAAATCTCGTAGTATGTCACGCTCTCCATCACCTGACcgatcatcattatcttcgTCACAAGTATTACAGTCACTCAAAGGCTACGACTCGCGAAGTCCTACACCGTCTAGCTCGTCGTCTCGTCAACGGCGATCCCGATCACGCTCGAGAAGCTCTTCGCGAAGTCGTCGGAAATCCCGATCTCGTTCACGAAGTCGATCACCAAGATCGCAGCGAAAACATCGAACCAGGTCAAGATCACGAAGCACTTCGCCAAAGAAAAGCTCGAAAAAGAGAAGGTCTCGGTCAAGATCGCGTTCACCATCAAAGAAAAAAGGCAAGAGGCGAAAGAAGTGA

Transcript

ENSQPTT00000033803

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5R7X2	U2 snRNP-associated SURP motif-containing protein OS=Pongo abelii OX=9601 GN=U2SURP PE=2 SV=1
O15042	U2 snRNP-associated SURP motif-containing protein OS=Homo sapiens OX=9606 GN=U2SURP PE=1 SV=2
Q6NV83	U2 snRNP-associated SURP motif-containing protein OS=Mus musculus OX=10090 GN=U2surp PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003564 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04818 all species →	CID	CID domain	Repeat	Interproscan
PF08312 all species →	cwf21	cwf21 domain	Domain	Interproscan
PF01805 all species →	Surp	Surp module	Family	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047488 all species →	Domain	U2-associated protein SR140, cwf21 domain	Interproscan
IPR006569 all species →	Domain	CID domain	Interproscan
IPR035967 all species →	Homologous_superfamily	SWAP/Surp superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR035009 all species →	Domain	SR140, RNA recognition motif	Interproscan
IPR000061 all species →	Domain	SWAP/Surp	Interproscan
IPR013170 all species →	Domain	mRNA splicing factor Cwf21 domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR008942 all species →	Homologous_superfamily	ENTH/VHS	Interproscan
IPR051485 all species →	Family	SR-related and CTD-associated factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23140 all species →	RNA PROCESSING PROTEIN LD23810P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12842	SR140; U2-associated protein SR140	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.