Gene detail

Detailed information of ENSQPTP00000027697.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031558974.1, transcription initiation factor TFIID subunit 6-like [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

Transcript

ENSQPTT00000033912

CCCTGGAATTTAGAGAACCAGATAGAGCGAGAGAAATGATTAAGTCAAACTGATGCACGCGTGTGCAAGATTATAACGACCGTGATGTCCTGGACCCTAACAGCTGAGTAGTGTGGCCttgatccaagatggcggctttgTTCAATACAACAATTATGAACACAACATATAATAATTTCTTTATCATTCTCTAGGAAAGTTCCCTCGCCCTTTCGACCAACTAGTACCTCAAGCACTTCCTATACCCTGTTTATTTGTTATCAGTGGAAAGGATAGATTATCTGAGGAACTACAATGGCAGAACCAATGGAAGTGGAAGAAGAACCAGTGGACAGTCAACTTACTCCTGAGAGTATTAAAGTGATAGCTGAATCTGTGGGCATAGCTAACCTGAACCACGAAGCTATTGCACTTATTGTGGACGAAGGGACTTATAGACTCAAACAGCTTGCTCAGGAAGCAGCTAAGTTTATGCAGCATTCAAAGAGGGGGCAGCTGGCTACTAAGGATATTGATAATGCATTGAGTGTGCAAAATGTGGAGCCATTATATGGGTTCCATGCAGCAGATTTCATACCATTTAGGTTCACCAGTGGTGGAGGACGTGAAGTTTATTATTACGATGATCCAGAAATTGACCTGAGTGATGTCATAATGACACAGCTACCACGCATCCCTGTTGATGTTACTTTAAAAGCTCACTGGCTGAGTATCGAAGGCTTGCAGCCAGCAATACCAGAAAACCCACCACCAGCACAAGTAAAACCAGCTAAAGATGACAACAAACCATCCAGCGATGCTCTCCCAGCACCAGCCCTGAATGCCAGCCAGAAAAAGACCAGTAAACTTAGTGATATCACATCAAAAACACCCACTAAAAAACCAAACCCCAAGACAGGCCTGCGTCCAGTCAAAACTGGTAATACCATGTCTACAGCCACAGAAGAAGGAATGGAGAACTTCAAGGGGATTGTTACACATGAACTTTCTGTTGAACAGCAGTTATATTATAGAGAAATAACAGAAGCTTGTGTTGGGTCTTGTGAGTCCAAGAGAACAGAAGCTTTACAGAGTTTGGCCACTGATCCTGGACTGTACCAAATGTTACCAAGGTTTTGTACATTTATTTCTGAAGGGGTTAGAGTCAATGTCGCACAGAACAATCTTGTCCTACTGATATACCTGATGAGAATGGTCAAAGCACTGCTTGATAACTCAACTCTCTTCCTTGAAAAATATCTACATGAATTAATACCAGCTGTTGTAACTTGTGTTGTGAGTAAAAAACTCTGCCCAAAACCTGAAGTAGATAACCACTGGGCCTTGAGGGATTTTGGAGCAAGACTCATCGCACAGATTTGCAGGACATTTAATTCTACTACAAACAGCGTTCAGACAAGAGTAACAAAAACATATTGCAAGGCTCTACAACAAGAGAAAGCACCACTTGCTACTCACTATGGTGCTATTACGGGACTAGCAGAACTTGGCCAAGAAGTAACCAAGGTCCTTGTTGTACCTCGACTTAAAATTGAGAGTACTTTGATAGTAAAAGCCTTACAAGAAGGGGATGCTGTGGAGAAAAATGCTgctgaaaacataaaaaatctCTTGTTGAAACATTGTCCAGGAGTACTTATTCGCATGCGTCATCCACCTGACATTCCAGAAAAGTATGAATCTGATTACGGTAACATGGGTCGGTTATTATGCACTAAAGTTGCTCAGCTGCGTCAAGGACTAAGTGCAGGAATAAGTGCACTGAAACCTAATGTATTAACACTAAAAACATCTGTTACCTTTCCTAAAGCAACCAATATAACCACTCCTACTACCCCTACGACACCTGTACAGGGTCCTAAGACTCCATTATTGATAGTCTCATCTGGTGCAGTGCCAACTACTCCTACAAGTCCAGCCATGAAGACGTTCACTGTTCCATCATCAGTGGTTGCTGGTGTTATTGGTACACCAACCATTAGTGGCGTACAGTCACCTACTGTACCAAAAAAGATTTGATTTTTCAGTCTTATTTTAATAACATGTACAATTTTAGCAGATATAATGTATAATGTATAAATTAGTAAACCtgatatttaattttattttgattgctTTGCTTAATGTATGAGGGAAAGAGGGAAAAACGAATGAATGAGATTTGGTGTAAATTTTTACAACCATtcccatcatcttcatctctGGGTGTTGCCACACCTTAGAACTGCCCTTTGTTTTTGCCTATCTTTATATCTCTTTATCTGACAATCTTTCTTTGAACTTTGAAAcaatgaacaaaaaaacattgcCTAAGGGAATGATCATGCAGTCTGAAAAGG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P49848	Transcription initiation factor TFIID subunit 6 OS=Homo sapiens OX=9606 GN=TAF6 PE=1 SV=1
Q62311	Transcription initiation factor TFIID subunit 6 OS=Mus musculus OX=10090 GN=Taf6 PE=1 SV=1
Q63801	Transcription initiation factor TFIID subunit 6 OS=Rattus norvegicus OX=10116 GN=Taf6 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006204 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02969 all species →	TAF	TATA box binding protein associated factor (TAF)	Domain	Interproscan
PF07571 all species →	TAF6_C	TAF6 C-terminal HEAT repeat domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011442 all species →	Domain	TAF6, C-terminal HEAT repeat domain	Interproscan
IPR004823 all species →	Domain	TATA box binding protein associated factor (TAF), histone-like fold domain	Interproscan
IPR009072 all species →	Homologous_superfamily	Histone-fold	Interproscan
IPR046344 all species →	Homologous_superfamily	TAF6, C-terminal HEAT repeat domain superfamily	Interproscan
IPR037796 all species →	Family	Transcription initiation factor TFIID subunit 6	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10221 all species →	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006367 all species →	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0046982 all species →	Molecular Function	protein heterodimerization activity	Interproscan
GO:0000124 all species →	Cellular Component	SAGA complex	Interproscan
GO:0003713 all species →	Molecular Function	transcription coactivator activity	Interproscan
GO:0005669 all species →	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0016251 all species →	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan
GO:0046695 all species →	Cellular Component	SLIK (SAGA-like) complex	Interproscan
GO:0051123 all species →	Biological Process	RNA polymerase II preinitiation complex assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03131	TAF6; transcription initiation factor TFIID subunit 6	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.