Gene detail

Detailed information of ENSQPTP00000028692.1 in Actinia mediterranea

Genomic Location: :...
NR annotation: XP_031554140.1, uncharacterized protein LOC116291154 isoform X1 [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSQPTT00000035193

TCCGTTTCTCAGATCATCCGAAGCGCATCTTGTCTTTCTTCACTGACTGCCATCTTTAAAGCGTTCCTCAAAATAAGACAATTTCTTCCCTTATTTCCCATCAAATTCAACCAAAATGGCTGGAAATCAAAAGTTTCACATCAGTAACCTATCTCCAAAATCAACCAAGGAGAGCCTTGCAAAGTACCTTGGATTAGATGCAACTCCATACTTACGATCATCCAGCTGGGTCGATCTGCCACTTGACAAGTCGGGCAAGTCTTTAGGTTTTGCATACGTTAATGTCCCCACTCACCTTGGGACCCACATGGCTGATCTAAATAACACCAAGTATATGGACAAGAGGATAGTTGTTCAGCCAGTTTATGGCAAGGGTAGCCAGCCATCTATGTATTCTAGCCCAAATGTTTTTGTGCCATCCGATATGGCAAATTATGCCAGTGGCGTTTGGTCCAGACCTGGAAATATTCGTAACCGAAGGTACGGTGGACATCCAATATCCTATGAACAAGTGTCTATCCCAGTGGAAAAGAAGCTGGCTCTCATTGATGTAGCCAtcaatttaacaaataaaatCTTCTCTCTGGATCTAGACTTCGTACTCGACAGAGCACTTAATGCTGGCATAGAGAAGATGATCCTGACAGGCAACACTATTCAAATGTCTGACAAAGCAGTCCTACTTGCAAATCGTCACCCAGGTTTTATTTATGCTGGTGTTGGTATTCACCCACACTTTGCCGAAAAACAATGGAATGCAAAAACTCTTGAAGTCATGAAAAGACTGGTTTCATTGCCAGAAGTAGTTGCAGTTGGTGAAGTGGGCTTGGATTTCCACAGAAACTACTCCAAGCAGGAAAACCAAATAGAAGCTTTTGAAAAGCAGgTTGAATTGGCCTGCGAGTTTAAGAAGCCTCTTCTTGCACATGAGCGTGCAGCCCACCAGAAATTCATGGAAATCCTAAGCAAGTTCAGGGGTCGTCTGCCTCCTATCGTGGTTCACTGCTTCACTGgaacaaaacaagaaatgaaaactTATGTAGCAATGGGCTTTTATATTGGAATTACAGGGTTTATTTGCAAAGAAAAagttgggaagaacctgagaGAAGCCATTGCAGACTGCCCTCTGGATAGAATACTACTAGAAAGTGATGCCCCATACATGATCCCTAATGCACCAATCACAGATCTGGATAGCGTATGCCGATCTTTGATCTCAAAGTGCAAGACTGGAAGAAATGAGCCTTGTACTCTTCCCGTTGTGGCTTACACTGTTGCTAAGTGCCTTGAGGTTGATGTTGAAGAGGTTACGAAGGCAACAACGGACAATGCTAATAGAGTATTCAATTTGACGAATACTACACCTGTAGACGAGGAAAGCTAAGGTGTaaattttttacaaaatataaAGGATTACTGGATTATTCACTAACGATTACCAGTAAACAAGGTATATCTTGATTACAGATATTACCAAAATACAGTTTCACATTCAATCATATAAAACTATATTTATGTTTAAAGTCGGTTTAGAAAACTTACGCGAGATAATTAAAAATGGATTTGTTTGTTCAAaggttttgaaaaattatcccaaaaaaaattagaaaaaaattatacaaaaatgtTATGTTATGAAATCAAGTATCATTCCTTAATAATGGAAATATTATTAACATTTGGAATTTTAGAATTTTCCAAAGACAAAAGAGAAATCCACAACACTAGATTAATAAAACTAGTGTTTATTGAAAATGTTACTTAGTTTATGAAGAGTTAAAAAAACCATATAACAAAATTCTAATAAATCTTAGCTTTACTTCAAACCAATATGTCACAGCACAGCCATCACTGCATAGACCTTTTCTGAGTTTCACAAATATGATGCATTCTGGTATAGCTTGGGTtactacaaacaacaccatttAATGATAAATTTAGCTTTTAATACTAGatttaaaatgaataaaaaacgCTACTAAATTACGACGTTTCGACATCGTCTGATGTCATTATCAAGTAAATTAATATTCAAGTCAGAAGCATTTTCAGGTCAATACATGCTACAGTGATTATATACAAAAGGATTATCAACAAAAGtgttttttgctttgattGAGTCTGATTTAGTGTTCAGGGTGGGTGACTTCTTTCTTATGAATAGCATTTTGTAAATCAGGCAGTCAAATTAAGTTTTGCACTTTTTTAAGATGGTAAAGTTCTGCCTGGGTGGTGCTGTTGTGAGACCGTGTTCTTCTAGATGATGCTTTCCAGTAGCTGAATAACGGCGTTCTTCAATACTCTTGTGCAGATAACGGGCTGTATAACCAACATAACTCACATCACATGAGCCACATTGATAAATAAACTACAAGTTGTTGGT

Protein

Uniprot

Uniprot term	Description
D8MKW4	3'-5' ssDNA/RNA exonuclease TatD OS=Erwinia billingiae (strain Eb661) OX=634500 GN=tatD PE=3 SV=1
B2VG45	3'-5' ssDNA/RNA exonuclease TatD OS=Erwinia tasmaniensis (strain DSM 17950 / CFBP 7177 / CIP 109463 / NCPPB 4357 / Et1/99) OX=465817 GN=tatD PE=3 SV=1
D0Z9R0	3'-5' ssDNA/RNA exonuclease TatD OS=Edwardsiella piscicida OX=1263550 GN=tatD PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01026	TatD_DNase	TatD related DNase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001130	Family	3'-5' ssDNA/RNA exonuclease TatD-like	Interproscan
IPR050891	Family	TatD-type Metallo-dependent Hydrolase	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR032466	Homologous_superfamily	Metal-dependent hydrolase	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10060	TATD FAMILY DEOXYRIBONUCLEASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016788	Molecular Function	hydrolase activity, acting on ester bonds	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0008310	Molecular Function	single-stranded DNA 3'-5' DNA exonuclease activity	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03424	tatD; TatD DNase family protein	EC:3.1.21.-	Enzymes with EC numbers	-	deepkoala