Gene detail

Detailed information of ENSQPTP00000028763.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031568913.1, PCI domain-containing protein 2-like [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

Transcript

ENSQPTT00000035285

GTTTGGCTCATGCGCAGTATTCCGTCTAggattcaaaatggcgcactTTACACCGAATCAGTACTTTCAACAGGTTGAGGGTGCGTTGAGTGAAAAAGATGGTGAAGCAGCAGCGGACCTCCTTTCGTTCAAGCATGCTCATATTGCCAGTCCAAGGCTGCAGATTCCAAATGCTCAGTCTCAGTGTGAAAGATGGTTTGAACAGCCATATGATGAGCTGGTAGCTTGTCATCTTAGGGCTGTGTGGGCCATAGCTAATAGTGATTATATTGAAGCATATGCATCTCAAGCTGGAGTGGTACAGGCTTTTATTCGTGCATTTCAAACACAAAAAGATGAAAACTGGTCATTACCTTTAATGAATGCAGTTACGCTAGACCTTCGCCAGTTTGCCTCCAAGGCAGATAAACAGTTGACTAGCAGTGGTCGCGGTAACCCTGGCGACACCCTGGAGAAGTCTGCAGAAGCTATTATGGGATGCTTCAGAGTTTGTGCTAGTGACAgCCGGTCATCTCTTGATGTGTCAAAGAAGTGGGGAATGTTGGCTCTTGTTATTCAGCTTTTTAAGATCTACTTTAAGATTAACAAGCTACACCTGTGTAGACCATTAATAAGAGCCATTGAAAGTGCTCCCATCAAAGAACAGTTCAAGATTGGACACCTTGTTGCCTACAGATTCTTTGTAGGAAGAAAGTACATGTTTGATGGTGACTATAAAGGAGCTGATGAGTATTTAACTTATGCCTTTGAGCACTGCCATAAAAGATCTCCTAAAAACAAAAGGGCTGCTTTAATATACCTCATACCAGTTAAGATGCTTTTAGGATATATGCCAACGTTAGCTgtgttaaataaatataaactaCCACAATTTACTGATGTTGTTAAGGCTGTAATAACAGGAAATCTACTTCTGCTTAATCAAACCCTAGAAAAACAACAAGCATTTTTTATTCAGTGTGGGATTTACCTAATATTAGAAAAACTCAAGATCATCACCTACAGGAATTTGTTCAAAAAAGTATCTCTTTTGATGAAAACTCACCAGTTACCATTAGATGCTTTTGTCATGGCACTCAAGACCATGCAAGTTGAGGATATGGATGTTGTAGAGGTCCAGTGTATTATTGCTAATCTAATCTATATGGGCTACATCAAAGGCTACATATCCCATCAGCATCAGAAGCTTGTAGTCAGCAAACAGAATGCATTTCCAGTACTGACAACATTCCTGTAGTCTCCTCAAGTCCTTTCTTCAGATTTCGTTCAACCCAGGATTACCCTTTATGTTTTGAACATCTGGAACATCAACAAGGGAATGAGGAGGCAATTATGGTATCAAACGCTTGTAGTCAGCAACATGATGCCTTTCCTGCTCTGACGGCATTCCAGTCCTATAGTCTCCCAATGTTCATTATTCCACACCTCAATTACACTGGTTTACCCCATACACCTGGAACATCTACAGAGGTTTTAATGGATAAAGTGTTCATATTACTAGAAACTAGCCTGCGTGCAGTCGAACTAACTAACTGGACtatacaagaaaaaaatctggCTGCACACAGGCTACTAGAAACCTAACCCAAGAGAGTCTGCAatgtactttaaaaaaatcatcaaaTCTCTAAAAATAATTAGAGAAGTCCTGATATTCAAGATATGAATCAAGGTTGAAATCCCACCCTCACACACCcaagaaaacaatttaaaataaatcattCAATTATGTATCTTTCttaataaaagttttttttctcaaacAAATAGGCAATTCTGTTAATTTTAAggcatatttatatttttatagctGTCAACATTTCAGTGTTAGAGTAAGCAGGCTTTCAGCTATTCGGGTGGGGCATTTTCCTATTGCTGAAAACAGTCTCAAAGTATATTAGCTCATTTTTAAAGGGCTTTTTAAATGAATctgattattttatttacgCAGAGATTTCATGCTAAAAGTTTGTGGTCGTGAATTTTTCCATGATGAATCGATGCTTTAAATAGATGATGTCATAATAGCTTATTTAAGCATAATAAACAAACACTGAGGTATGTTGTAAGGATCTCAGGCTGTCAAATTTTGGACCTGAAGCTGTGTGACCTTAATCCTCAATACGTCCAATCTGTAACTCAGCCAAATCAATATAACATGCAGATATAAAGGTTAAAAAAGGACAATATCTAAGACACCCATCGTTAAGATCCACCATTTACTATTGTATATGTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5JVF3	PCI domain-containing protein 2 OS=Homo sapiens OX=9606 GN=PCID2 PE=1 SV=2
Q8BFV2	PCI domain-containing protein 2 OS=Mus musculus OX=10090 GN=Pcid2 PE=1 SV=1
Q2TBN6	PCI domain-containing protein 2 OS=Bos taurus OX=9913 GN=PCID2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003802 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01399 all species →	PCI	PCI domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000717 all species →	Domain	Proteasome component (PCI) domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR045114 all species →	Family	Csn12 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12732 all species →	UNCHARACTERIZED PROTEASOME COMPONENT REGION PCI-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000973 all species →	Biological Process	post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery	Interproscan
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0006368 all species →	Biological Process	transcription elongation by RNA polymerase II	Interproscan
GO:0016973 all species →	Biological Process	poly(A)+ mRNA export from nucleus	Interproscan
GO:0070390 all species →	Cellular Component	transcription export complex 2	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23801	PCID2, THP1; nuclear mRNA export protein PCID2/THP1	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.