Genomic Location: chr7:13243269...13255943
NR annotation: XP_031560266.1, serine palmitoyltransferase 2-like [Actinia tenebrosa]
Species Actinia mediterranea · all data for this species · gene families
ENSQPTP00000032449.1 in AMEDI (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| P97363 | Serine palmitoyltransferase 2 OS=Mus musculus OX=10090 GN=Sptlc2 PE=1 SV=2 |
| O54694 | Serine palmitoyltransferase 2 OS=Cricetulus griseus OX=10029 GN=SPTLC2 PE=2 SV=1 |
| O15270 | Serine palmitoyltransferase 2 OS=Homo sapiens OX=9606 GN=SPTLC2 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001567 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00155 all species → | Aminotran_1_2 | Aminotransferase class I and II | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR050087 all species → | Family | 8-amino-7-oxononanoate synthase class-II | Interproscan |
| IPR015424 all species → | Homologous_superfamily | Pyridoxal phosphate-dependent transferase | Interproscan |
| IPR015421 all species → | Homologous_superfamily | Pyridoxal phosphate-dependent transferase, major domain | Interproscan |
| IPR001917 all species → | Binding_site | Aminotransferase, class-II, pyridoxal-phosphate binding site | Interproscan |
| IPR004839 all species → | Domain | Aminotransferase, class I/classII | Interproscan |
| IPR015422 all species → | Homologous_superfamily | Pyridoxal phosphate-dependent transferase, small domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13693 all species → | CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004758 all species → | Molecular Function | serine C-palmitoyltransferase activity | Interproscan |
| GO:0017059 all species → | Cellular Component | serine palmitoyltransferase complex | Interproscan |
| GO:0046512 all species → | Biological Process | sphingosine biosynthetic process | Interproscan |
| GO:0046513 all species → | Biological Process | ceramide biosynthetic process | Interproscan |
| GO:0016740 all species → | Molecular Function | transferase activity | Interproscan |
| GO:0009058 all species → | Biological Process | biosynthetic process | Interproscan |
| GO:0030170 all species → | Molecular Function | pyridoxal phosphate binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00654 | SPT; serine palmitoyltransferase | EC:2.3.1.50 | Amino acid related enzymes | ko01007 | deepkoala |
Genes whose expression across the transcriptome samples of Actinia mediterranea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Actinia mediterranea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
