Gene detail

Detailed information of ENSQPTP00000035888.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: EDO32620.1, predicted protein [Nematostella vectensis]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

No sequence record for ENSQPTP00000035888.1 in AMEDI (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3ZBC0	DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Bos taurus OX=9913 GN=POLR2K PE=1 SV=1
P53803	DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Homo sapiens OX=9606 GN=POLR2K PE=1 SV=1
Q63871	DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Mus musculus OX=10090 GN=Polr2k PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0013047 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03604 all species →	DNA_RNApol_7kD	DNA directed RNA polymerase, 7 kDa subunit	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029040 all species →	Homologous_superfamily	RNA polymerase subunit RPABC4/transcription elongation factor Spt4	Interproscan
IPR039747 all species →	Family	DNA-directed RNA polymerases I, II, and III subunit RPABC4	Interproscan
IPR006591 all species →	Family	RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12056 all species →	DNA-DIRECTED RNA POLYMERASES I, II, AND III	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001054 all species →	Molecular Function	RNA polymerase I activity	Interproscan
GO:0001055 all species →	Molecular Function	RNA polymerase II activity	Interproscan
GO:0001056 all species →	Molecular Function	RNA polymerase III activity	Interproscan
GO:0003899 all species →	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0005665 all species →	Cellular Component	RNA polymerase II, core complex	Interproscan
GO:0005666 all species →	Cellular Component	RNA polymerase III complex	Interproscan
GO:0005736 all species →	Cellular Component	RNA polymerase I complex	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03009	RPABC4, RPB12, POLR2K; DNA-directed RNA polymerases I, II, and III subunit RPABC4	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.