Detailed information of ENSQPTP00000038405.1 in Actinia mediterranea

Genomic Location: chr7:15554279...15556471
NR annotation: XP_031551048.1, U4/U6 small nuclear ribonucleoprotein Prp31-like [Actinia tenebrosa]
Species Actinia mediterranea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for ENSQPTP00000038405.1 in AMEDI (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8CCF0U4/U6 small nuclear ribonucleoprotein Prp31 OS=Mus musculus OX=10090 GN=Prpf31 PE=1 SV=3
Q8WWY3U4/U6 small nuclear ribonucleoprotein Prp31 OS=Homo sapiens OX=9606 GN=PRPF31 PE=1 SV=2
Q7SXM7U4/U6 small nuclear ribonucleoprotein Prp31 OS=Danio rerio OX=7955 GN=prpf31 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007566 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01798
all species →		NopsnoRNA binding domain, fibrillarinFamilyInterproscan
PF09785
all species →		Prp31_CPrp31 C terminal domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027105
all species →		FamilyU4/U6 small nuclear ribonucleoprotein Prp31Interproscan
IPR002687
all species →		DomainNop domainInterproscan
IPR019175
all species →		DomainPrp31 C-terminalInterproscan
IPR012976
all species →		DomainNOSICInterproscan
IPR042239
all species →		Homologous_superfamilyNop, C-terminal domainInterproscan
IPR036070
all species →		Homologous_superfamilyNop domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13904
all species →		PRE-MRNA SPLICING FACTOR PRP31Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000244
all species →		Biological Processspliceosomal tri-snRNP complex assemblyInterproscan
GO:0000398
all species →		Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0005687
all species →		Cellular ComponentU4 snRNPInterproscan
GO:0046540
all species →		Cellular ComponentU4/U6 x U5 tri-snRNP complexInterproscan
GO:0071011
all species →		Cellular Componentprecatalytic spliceosomeInterproscan
GO:0097526
all species →		Cellular Componentspliceosomal tri-snRNP complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K12844PRPF31; U4/U6 small nuclear ribonucleoprotein PRP31-Spliceosomeko03041deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Actinia mediterranea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Actinia mediterranea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.not in the sequence tableopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.not in the sequence tableopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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