Gene detail

Detailed information of ENSQPTP00000040012.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031573584.1, WD repeat, SAM and U-box domain-containing protein 1-like isoform X3 [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

Transcript

ENSQPTT00000041587

CAGGGGAAagaggattttttaaatagaaaacactaaaaagaataaaatatttagtcCTAAGGCTATATGACGTCATCTTCTAAATCGtaatctaaaaatagcatattCCCAGGTCTTCAAAAGTCTCGCTCTACCAGTTTTGTCCGCAAGGGACCGAACGTGTAGAAACAAGATGGTGGGTGTCTTGTGAACATGATTACGTACTGCACTATAAATAATCTTAAAAACCTTAAATAAAACGGCAAAACTAGGCAAAAACATTCATCTGCAAATGGCCGAAATAATATATACGCTTTCGAGGCATAATAGAGACGTGAATGGTTGCTGTTTTTCGGCAAACAGCCGCGTTTTAGCTTCGTGTTCAGGGGACAAAACGTCTCGACTTTGGGATATCGAAAGTGGAGAAGAACTGCCACAGTCTCCTCTTGAGCGGCACGACTACCAAGTAAACTCGTGTTGTTTTTCCCCATTCGGGACTATTTTAGCTACTGCATCTAGTGATTGTAAAGTTATCTTATGGGATGTTAATACTGGGGAATGCTTAGCTGTACTGGAGGGCCATCGAGGAGGAGTCCGAACTTGTTCCTTCTCTCCGAACTCGCAATTTTTGATTTCTGGATCTGCCGATGAAACGTTTTGTATCTGGGACGTGTCGACTAGGAAGCTGGTACGATGTGTGGATAAGATAGAAAGTACTGTTAATGCATGTGTTTTTACACCAGATGGACTTCAAGTCGTAATAGGGACGAGTAACGGCAATTTGTCAATATTTGATGTACACAAAGGCAACCTTCTGAAGTATTTGGGAGACGCACACGACCTTGGCGTTACAGCCTGTAGTTTTTCTCCTACCTTTGGATCTGCAGTTCCAACTGTAACAGACACTAGTGGCTGTGCTCCTCAGTTTCTGCTGGCGACAGCTGGGAATGATAACCTCGTGAGACTTTGGAATATATTCACTTCATCAGcTTATTCTGAAGATTGCCACATTGATGCTCGGTGTGTATTGGATGGACATCAGGGACCAGTTTTGGACTGCAAATTCTCTGCCAATGGAAGAATTCTTGCATCTGCGTCAAATGACAAGACAGTAATTTTATGGGATCCTCTTAGGGCAGTAACATTGCATACTATCACTGGACACACAAGGTATGTGACATGTTGTGCCTTCTCACCTGATAGTAGATGGTTAGCAACAGGGTCGGGGGACAGAACTATGAGAGTGTGGCAAATAACCCTTACAGAACGAGGCGACCTTGATACTAATGCCATCATATTGGAGAGAAAGGATGATTCCCAAACCATGCCTTTGGAAAAACCCAAAAAGAAGCTGCTTGCTTTATGGACAGTTGATGAAGTGTGTAGTTGGCTGGAGACCATTGGGTTAGAGCAGTATGGTGAATGCTTCAGGGAAAATGCCATCGATGGAGCAGAATTATCAAACATGACTTCTGAAATGCTTGTAAATGACATCAAAATTGGTCCTGTTGGACATCGTAATAAAATTCTCCGAAGCATCAACGAcattaagaaagaagaaatagATGACAATATTCCTGATGAGTATCTCTGTCCAATATCCAGAGAAGTGATGACAGATCCTGTTATAGCAGCAGATGGTTACTCCTACGATCGTAACGCCATCGAGTTATGGTTACGGTCAGGACGACTTACCAGCCCCATGACCAACGCCCCTCTCAGGAACGCCACCCTTACTCCTAACAGGATGCTCAAAAACATCATTAATCGACATTTTGGTCAAGCCAACCAACCCCTGGCCTAATGTATTCCCTGGCTGCGATATATTTGGTAATTTTAATTCCAGGAATTTGTCCCCCTTGCAATCTCTTCCTGGTCTTACTGTTTAGTGGTCAACCAGTCTATGCAACGCATTGTTGAATCTTGGAGCGAAAACCAGCTCAAACAACTcccttttgatatacttttaaTCATCTGCTAGTATGAAGTGCGCGTTAACATTAGTCTGTGTGTCGGGGGGTCCAGTTCGAACGTAACCTGAGTACATCAGGCTCTCCTTCCCATCCCCACTCACCCTCCCCCGGGGCCTGATACTCAGGCTAGTTCGGACGATCGTGCTTATGACTCTCGTACTTCAGAAAGCCAGGCGCTGTCATTGTAATAGATTAGAGGAAAGAGAAACGAACACATAATCTATTATAGTAAAGAGTTGGCATGGGCGAAACCAAGAAAGGAAAATTGAAATGCTTTCGTCTGGAGTAACTTGAAAGTTGTAAATAGATAACATTTAGtgtgaatattattttttcttatttactctaATGTGTGTGATCTTAAAATATAATACATCAAAACGATGAAAAGGACTTGCTTCCGTTTTCTTGTGAAGCAATTTATTGACTGCAACATcatgaaatagaaaacgcgcatGCGTGCTGTGTACTCTTATGAAGCACACgccattaaccaatcagaaaacaaGATTTATATAACAGTACTTTTATAATTTGGAAGTTGAAAGTGCGCATGAGAGCTATTAGGTATATTCTTCTTCGCAGCCGTTATTAATATTGCCCGGGACCGaatcatatatatacatatatatatgcacCTACtggcaagaacgttgtcatgcGATATTAGAAcagtagtaatttagtgagaaagaaatatattaaaagacaaaagacaaagttcagcttcagtgatcttcttttgttttttaatataattcctatcccactaaatcaataatgttctattttcgtatgacaacgttcttgcaagttgGTGTAAACTTCAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5FVN8	WD repeat, SAM and U-box domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Wdsub1 PE=2 SV=1
Q8N9V3	WD repeat, SAM and U-box domain-containing protein 1 OS=Homo sapiens OX=9606 GN=WDSUB1 PE=1 SV=4
Q9D0I6	WD repeat, SAM and U-box domain-containing protein 1 OS=Mus musculus OX=10090 GN=Wdsub1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002737 (this species only)
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF07647 all species →	SAM_2	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF04564 all species →	U-box	U-box domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR003613 all species →	Domain	U-box domain	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR052085 all species →	Family	WD repeat, SAM and U-box domain-containing	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46573 all species →	WD REPEAT, SAM AND U-BOX DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24764	WDSUB1; WD repeat, SAM and U-box domain-containing protein 1	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.