Detailed information of ENSQPTP00000040304.1 in Actinia mediterranea

Genomic Location: chr1:28709867...28740189
NR annotation: XP_031569191.1, uncharacterized protein LOC116303744 isoform X2 [Actinia tenebrosa]
Species Actinia mediterranea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q54W86Probable myosin light chain kinase DDB_G0279831 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0279831 PE=3 SV=1
Q55D99Serine/threonine-protein kinase pakA OS=Dictyostelium discoideum OX=44689 GN=pakA PE=1 SV=1
Q90ZY4Serine/threonine-protein kinase SBK1 OS=Danio rerio OX=7955 GN=sbk1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000794 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12796
all species →
Ank_2Ankyrin repeats (3 copies)RepeatInterproscan
PF00069
all species →
PkinaseProtein kinase domainDomainInterproscan
PF00023
all species →
AnkAnkyrin repeatRepeatInterproscan
PF06479
all species →
Ribonuc_2-5ARibonuclease 2-5AFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036770
all species →
Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR002110
all species →
RepeatAnkyrin repeatInterproscan
IPR011009
all species →
Homologous_superfamilyProtein kinase-like domain superfamilyInterproscan
IPR000719
all species →
DomainProtein kinase domainInterproscan
IPR038357
all species →
Homologous_superfamilyKEN domain superfamilyInterproscan
IPR010513
all species →
DomainKEN domainInterproscan
IPR008271
all species →
Active_siteSerine/threonine-protein kinase, active siteInterproscan
IPR017441
all species →
Binding_siteProtein kinase, ATP binding siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24118
all species →
POTE ANKYRIN DOMAINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0004672
all species →
Molecular Functionprotein kinase activityInterproscan
GO:0005524
all species →
Molecular FunctionATP bindingInterproscan
GO:0006468
all species →
Biological Processprotein phosphorylationInterproscan
GO:0004540
all species →
Molecular FunctionRNA nuclease activityInterproscan
GO:0006397
all species →
Biological ProcessmRNA processingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ENSQPTP00000040304.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Actinia mediterranea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Actinia mediterranea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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