Gene detail

Detailed information of ENSQPTP00000041366.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031575347.1, poly(U)-binding-splicing factor PUF60-like isoform X2 [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

Transcript

ENSQPTT00000025260

gtctttatataaagattacatgtgtctttatataaaatcacttgaatactaatgaagaggactttatcgggtataaaggttcatgcacgtgatgTGTATGGTGGCTGCAATTGGaacataagcttatgaattattaatgagtgttttaaaacttgattatttaacttttttttagaATGTTTTTGTGTTTATTAATTTGTATCAATGTTGGTTAAGAAATGTATTAGATTATATTCTTTGGAATCAAAGTTGAAGCCCACAACTCTCCCAGCTTGAGAATTCCAGTTATAAGTTTCTGAATGCTTTCCTGTTATTGCAAATATACTCTAATATTGCGGTCCAATATTCCAGGTAATGGTGAAAAGGACGAACAACCTGGAGATGATGGAACACGAGGAGAGCTTGTTCTTGGCCCTGGCGCAGGAGGGATGCAACCAAGACAGTCAGAAGTAAAACGCTGTCTACCTGCTCTGGTGTACACACAAGAAGAACTATTAAAAAAAGCCAAAAGATATGCCATGGAACAGTCTGTACAGCAGGTTCTTGCGAAGCAGCAAGCCATACAACAGCAACAGATGTCAGCTCTGCAAACCGCAGCTCAGCGACAACGAGCTCTGGCTCTTATGTGCAGgGTATATGTTGGTAGCATAAACTTTGAGCTGAGAGAAGAACACATCAGACAAGCATTTATACCATTTGGTCCAATCAAAAAGATAGATTTATCTTGGGACCCTCTTACCATGAAACATAAGGGATTTGCTTTTGTTGAGTATGATCTACCAGAAGCAGCTCAATTAGCCTTGGAACAAATGAATGGAGTATTGTTGGGAGGACGAAATATCAAGGTTGGTCGTCCAAGTAATGTACCTCAAGCAGCCCCTCTCATTGAACAATTTGAACAGGAGGCTAAAAAATATGCCAGAATATATATTGCATCTGTACATCCTGACCTGCATGAAGATGATATCAAAAGtgTGTTTGAAGCATTTGGTAAGGTAGTCAGCTGCACCTTAGCAACAGAAGTAATGCCTAACAAACACAAGGGGTATGGATTCATAGAATATGAAAACCAACAGTCAGCCAATGATGCCATTGCATCTATGAACCTCTTTGATCTTGGTGGGCAATTCCTTCGAGTCGGCAGAGCCATAACTCCACCCTCATCAGGTGGTTTATCAGTACCAAGTTTTGCTCCTCCACCAGGGACTCTACCAGCTGCAGCTGCTCTTGCTGCAGCAGCTGTGTCAGCAAAAATACAAGCTCAAGAACAAGGAATCCAGGGTGAAATTGCATttcCTACTATAACAATACCAACTGTCACTAATGTCATCACTCCTGTCATTACAACGCCTGGCTTGGTCACTTTTCCTTCAGCTGCAGGACTGTTGAGTACAGGGCTTGCATCCCAACCCCTGTTGGCTACAACAGCTATGATATCAGTTCCTTCAACTGCAGTAGTAAAACCAGTCATTGCCACTCCAGTAatgacaacagcagcagccTTGACATCCACAACAGCTGCTGTAGTCCAACTGcagcagcatcaacaacagTCAGTAGTGGCTATAGCCCAGCAACAGGCTGAAGTCAGGGCCAAGATTGAAGAGGAAGCCCAAAGGAAAATGATGGAAGGAAGCATTAGTCATGAAGAGAATATGTCAATTTCTGGTAGTAATGCACGCTATATGGTCATGCAGAAGTTATCACGAAAGATTGAGTCCAAGTTGATGGTCCTTCGAAACATGGTGGGAGTTGAAGATTTGGATGAAGACTTAGAGCACGAAGTCACAGATGAGTGCAGTAAATTTGGCATTGTAAACAGAGTGGTTATCTATAAAGAAAAgcaaggagaagaagaagatgcagAAGTGATTGTCAAGatctttgttgaattttcaTCCACATCTGAAACTGAAAAAGCAGTAGCTGCACTAGACAATCGATGGTTTGGAGGTAGAACAATTAAAGCTGAAGAATATGATGAGGCCAAGTTTGCAGCTGGTGATTTATCTGGTTGAGGGGAAGAAATATTAGCATTATCAAAGGGAGAATATATCACTGGAGCTCATATCTTAATATTGCATAAGAACAAAATAATGTTATCTGCAGTGGGAATTTATTGATTCACAAGTACTTATATCAACAAATTAattctcctttttctttcctcaCCTTTCTGTacattccttttttcttttcccacTCGGTTggttctatttctttttcttttcccacTTAAGGAAATTCtaaatttcttattttctcaAAGCATGCTACCACCTGAAGGGACTCCAAAAATTTGAAACTCATTCTTTGTAACCCTAATTCATAGACTGTAGATTGTCTTATACTACAACACCTAGGCCAATACTTTAGTGTTACCGATGCAAAAGTAATTACAAACAATTTTAGGCCTTGGCTTTTGGTTCCATAAGTATAAACCTATTACCTGGATCATAGCACTGTAAGTTTACCGGAccaaagtcaaaacatattcCATGCTACTAGATCTTTGACTTTCAGAAATGTGTGAAACTGTGGCATAACTAGCTAGTTTATTAGTTTGTCTAATTGATAGGAAGGATATAGGTGATCAGATATCATATTTCATGAAATTCTCGAAGAAATGTTTTACGTTTTCCACATCCTAAGAATGTTCGGTGTATTTATGCTTCTGTGTTGAAAGCTCATAGAAGTCACTTCTCATAATAGAATCCTTTGGGTTTACTGTTTGTATAGGAAGCCATAGAAGAGATTGTATTTTGTAGTCTGTTAATTCACTTGAATGTAAATAGTTCATACAAACGTTCATTGAACTTAGTTAAAAGaaagcatttttattttggtaGTTCAGAGCACTTGTCTCTTCTTCAGTTTTATTGGTCGTTATTGTACGTTGGTTTAGTGTGCTGCTAGTGAAGCAGAAAGTGTGCACTATTAACCCCAAGAAAAGGTGCTTTGCAGTAAGCATAGGCCTGTGGTGGGACTTCAGGAAGGGTCCAGTGCTGGAAAGAGGG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3UEB3	Poly(U)-binding-splicing factor PUF60 OS=Mus musculus OX=10090 GN=Puf60 PE=1 SV=2
Q9WV25	Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus OX=10116 GN=Puf60 PE=2 SV=2
Q9UHX1	Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens OX=9606 GN=PUF60 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003878 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR034209 all species →	Domain	PUF60, RNA recognition motif 1	Interproscan
IPR034211 all species →	Domain	PUF60, RNA recognition motif 2	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR003954 all species →	Domain	RNA recognition motif domain, eukaryote	Interproscan
IPR051974 all species →	Family	Poly(U)-binding-splicing regulator	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR034212 all species →	Domain	PUF60, RNA recognition motif 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47330 all species →	POLY(U)-BINDING-SPLICING FACTOR PUF60-B-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0000380 all species →	Biological Process	alternative mRNA splicing, via spliceosome	Interproscan
GO:0000381 all species →	Biological Process	regulation of alternative mRNA splicing, via spliceosome	Interproscan
GO:0006376 all species →	Biological Process	mRNA splice site recognition	Interproscan
GO:0071011 all species →	Cellular Component	precatalytic spliceosome	Interproscan
GO:0071013 all species →	Cellular Component	catalytic step 2 spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12838	PUF60; poly(U)-binding-splicing factor PUF60	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.