Gene detail

Detailed information of ENSQPTP00000041784.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031555166.1, alsin-like [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

ENSQPTT00000020233

atgtttttttctaaagaagaaaatggtAAAGGAACagcatatttttggaagtcAACAAGTATTGAGCCTCAGATCTCGTCATTAAGCCTTCGCCATGGGATTTCAAAGGTTGCACTCGGTAACGAACACACCTTAATTCTGACTTATAACTCCGAAGTTTTCGCTGTTGGGGAGAATTTTTACGGACAGTTAGGATTCGGGGACGTAACTCGACGATCACAGACGACACGGCTTACCGAATTAGCAGGGAAGAATGTAGTTGATATTGCTTGTGGTGCTTATCATAGTTCTGCTGTTTGCGAAAATGGTGAGCTTTTCTGTTGGGGAGATTCTTCGAATGGACAGTGTGGTATTGGAGATATTAAATGTACTAATGTACCGACTCTAGTAGTGTTTAATCCTGCATTATCACCCACATCAAGGCCAAGATCTCGACCTGTGGAATCTGAAGATGCAAAACTTTTGACTGataaattatcttcatcttcattaGGAACCCAAAGCATTGATCAAGATGTTCCTAAAATAAGAGACGTTGCTTGTGGTGATGGTCATACTCTTGCACTAACTTCTAGTGGTAGAGTTTGGTCTTGGGGCATGGGAAGTCAAACTGGACACGGTGTGCAAAATGAATGTATTAGGGAGCCGAGAGAGGTTGAAGGTCTTAAAGGTCGATATGTCACTGCCATCAAGTGTGGTGCATATCACAGTATTGCACTGGTTAGAGATGCATCTATACATCCTAAACTTATACCACAAAGGAATGAGAAACTTTTCCAGGGATCTTCAGGAAAGAAACGTAGTAAAAGGCTTCGGAGGTTCAGCCGCTCTAAGGAATccactaaaggattaaaaaagACACAGTCATTGCTAGAAAATCCAGAGCTCAGTCCAAAAGCCCCCACAGCAGAAATTAGACGAATTCATGTGAACACGTCACCGAAGACTTATCTCAGCTATGATCCTGTTGGCAGTGATTCTCAAAATTTAGAAAGAAAAGGATGTGACAAGGAGTGCAACTCTGATAAAATTGTAAAAGATGATAGAGATTTGGAGGAAGGCCCTGCAAAGGGCGATGATGGTGAGTTAATCGATAATGATACAAGAGTTGATGTGATCTCCACAAGTAGTAAAACAGAAAGAGAGGATTCTATTGTGTCAGGGGATGATAATACTACATCTTTACTCTCTGACAACAATCATGCATCAGTAGTACCCCGGTCGGCATCAGCAAGTATACCCATTAACCGACTTAGTATCAATGACAACCACTACGGCTTCCCAGAAATGAAGCGGTCCCCATATGCCTATCTTGAAGGAAGCTCTCCAGAACCATCTCCTCCTCAACCTGGGTTTCTCAACCAAAAAAACTTTGACCACGTTAGTAATGATTTATTTGTAACAACTGAAGTATCAGGCAGCTTGTATGAGACTTCAGCACTGTTTGAAAATGTTGAGCCTGGTTCACTTACTAGTGTTAAGAGTGGGGGAACAGACTCTGATCCTGAAGACGTGTCTCCAACAGCAGAGGACAAGAACAGCCAGGGTAGCTCATACTTGGGCTTTGGTATACTTGCAAGCCGTTTTCGACAAGAAATGGACCTTGGTAAACTGACCAGTGCTGTTTATGATTCGGTGACAGGAATGTTTATGTCATCAGCATCTACTTTTATTCCCACGCAAAGTGATAAATCCCTAACACAAGGAGGAAGTTGTTTGAACTGTGGTGTTCTAGGAATCTGTATTTGTAACGAAGAAGTTActgagaaggaaagaaagttCTGTCACGAAGGATATGATACTGAGGTTTGGAcatgggggaggggtgggtgtgGACAGCTTGGTCATGGAGATACTGAAGACAGgTCAATACCTTACTGTGTTGATGGACTTAGAGGGACAGGAATTATCAAAATTGCTGCTGGAACATTTCATTCATTAGCTCTGACTGTATAttgtcagGTGTTTTCATGGGGAGATAACTCCTGTGGTCAGCTTGGCCATAAGAAGACCATGACTGTCAAGCCAAGGAAAGTTAAGTGTTTTTCTGATGTTCTTATTTGGGATATTGCTTGTGGAAGTCATTACTCTTTATTCATTGGTGACATGGCTTTAAACAGACCTGATGTTTATGTCTGTGGAAGGCAACCAAGCGAAATGCCAGTTATTGCAGCAGCACTCAACAAGATGCAAGGGGCAACAGGTTTTCCCTTATCAAAGGACGATACTGCCCTCAAAACTGCAGCCAAATCCAAACCTCCCCTGACACATTCCAGGTCCTTTGATGATGCAAAAGAGAGATCATTTGGAGCCGTACGAGTAGAGTTGGTCAGATTAATAATGTTCAGGAAAGTGGGTAGTGTGAGGTGTGTCCTGGCTCAGAATGAACATTGCTGTTGTATTGCCGATGGTGATGCTACTGGTGTGTTGCATGTGTTAGGGGAGCTTTCTGGTGAGGAAAGACTGTTTTATTACCAGTTGGCTTTGATATGGCAAGCGGTATTTGTTTCTGTTATCCAGTCAGAATTTTGGTCGCTGATGGTTCCTCAAGAGAGTGGGACAGTCTTGGTTCCAGTTGTGCAGGGATACCTGCATCTAATGAAATGTGTGTCATCTAGCATGGTATCTCTCACTCAAGTCATCCAGGATGTTGAGTCAATGGATAAACTATTTGATACTTGTCTGTCAGAAGAATTTATTACAGCATTTGAGAGATATTCAGAGTTATACAACAATGCAGTAGCATATGGAGTGTTCATGTTATTCACCAGTCTTGCAGGAGATGTTGGCCCACAGTGTAAAGCAGTTCTACGAGACCTGTTAGAAGATGCTGATAAAGACTTCATTGGCTTCATCGATGCATTCCAGTGGGTTGCTCGTGTACCACTTATCAGGATGCAACACTATGTTGCTCTTACTAGTAAACTGCTCACTCTTTTAACACAGGAGCATCCATGGTACTCCAAGCTTAAACATATTGCATCAATGTGGCATACACTGATCTGGCAAGACGAGAAGAGATACTTGGTAGCAGAACAGACCAGGCAGTTTTGGGAAGACTGTCCCTCTAAAATAACTGAAATCTTCAAGGTTTCTAATCGACGACTCCTCAGAAGCAGTAAAACCCACCCTCTCTACCCCTCTAAGTCAGCACGGTTTTCTAGTCCAATGTATGTGCTGTTCGATGACTACTTTGTCCACGTCCAGTCCCACAAGAATTACCAAGCACTACCTCTGAATACATTATGGGCTGTCAGCGTGGAGAACTCAGAGAGTCTAATCAATGCTATAAAGATCATATCACCAGAGGAGACACTACTAGTGTGTGCACCATGTGCTGAGGACAAGGCTGACTGGCTACTGACTATCAATCAAGCAGTAGCCAGGGTTATCTCAAAGACCAGTACATACAGACTGGGTAAAGAGGCTGTGAACATGACAACTGGTAACCTACCTGCAGCAACAGCACGTGAAGCCACCTACACATTCACACAGGATACACGCTACAAGACAGCCACTTACACTGGAATGTGGCTGAATGGTAAACCGCATGGAAGAGGTGAGATGGTGTGGACTAATGGTAGGCGTTACACTGGGGAGTTCAACCAGGGATTACACGATGGGGATGGTGTCATGGTGTTTCCTGTGAACCCAGAGAATCCAGCCGAGAGATATGAAGGTCAGTGGTTGAGCGGCAAGATGACAGGGTATGGGAGAATGAGATATACCAATGGAGACACGTACACGGGTCACTGGTTGGATAACATGCGGCACGGTCATGGTATGATGAAGTGCGGCGCACTATCCTCTTCTGCTGCTAGTGTGTATATTGGGGAGTGGATgtacaacaaaagacatggctaTGGAACCTTGGACGATGTTCTCAAGGGCGAGAAGTACATGGGAATGTGGGAGAATGACTGTCGACATGGTTCAGGAATCATCGTCACTCTAGAAGGCATCTACACACAGGGCAACTTTATCCAGAACAAACTAATGGGTACAGCACAGTTGGTGTGCGATGACAACACATTCTTCGATGGCGAGTTTGCAGGTCATTGTCAATTAGCAGGAAAGGGAACCCTTACATTACCTAATGGTGATGTGATTGATGGTGCCTTCACCGGTCAGTGGGGTGATGGTATCAAGATTAATGGCACTTACTTGAAGCGAGAGTCTGACAGTAATTCCAGAAACAAGAGTGTCGTTCCTGAGGTCAAGCCTATAGTGTCACCTGATCGGAAGTGGACAGCTCTGTTCAGGCAGTGTCGGGAGGCACTTGGTTGCCATGGTGATCGTGACGCTGACCCTCAGATTGTCTGGAAGTGTTTATCAATGGCATTACTGAACGGTCACCACGTCAAACTACCACGGACTGAACAAGACATTATGCAGGAATTACTAAACGTCAATAATGAGATGGAAAGAACAGGAAGACATTGTCTTGATAATAAGGCATTACAGAATTATCTAGCCAAGGCCTTTGAAATCAACTATCATCCACTGGGGCAACTAGTGACGAATCTTGTAGACGTGTACAGGGCTACCTATGTTGGTATGGGTACCCATAGACGATTATTACCTCATGCGGTACTGGAGGCTAAGTCTATCATACACAGACTCTATAATATTATACGCCTTCTTTTCGTCGACCTACCAAACGAGGAATACGTACACCTCGATAAAGACTCTTTTGGCGGTGTGTCCAACATCCACACTGAGATCTCTACATCAAGCAGTGCCTTACTTCATCCCATTATCCTTCCTTTGCTATACCCTCCATTGTTTACCCTCTACGCCCTCCACAACGAGCGCGCTGACAGCGTCTATTGGGAGAGGTTATTACAGTTGAACTGGAGGTCGGATCTTGCCTTGATGACCTACGTAGGGTCTGTGTGCCTAGCTCTATGTTTACGTGTTTTACATCATTTTTCTCAGATAATGGGAGAGAATCGCGAGGCTCACCATTACGTCACGGCCATAGAAGCACTTCAGCAAATGAGTACCAAGCTTAGTCCAATGGAGAAACTAGCAGTGCTCAAGTCAACATTTGAGAAGATCAACGagGAAGTGCACACCTTCTGGAAAGGAGAAGAAAAACTTATTTCCTTAGATGACTTGTTTCCAGTCTTTCAATTTGTTACCATCAGAGCCCGTATTCCCCACCTGGGCTCAGAAATCCATTTTATTGATGACATGGTGGATAGTCACGTGCATGTGGGTGAACAAGGTCACATGTTTACTACCCTCAAGTCTGTAAATACATGCCGATGA

Transcript

ENSQPTT00000020233

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q920R0	Alsin OS=Mus musculus OX=10090 GN=Als2 PE=1 SV=3
P0C5Y8	Alsin OS=Rattus norvegicus OX=10116 GN=Als2 PE=1 SV=1
Q5BIW4	Alsin OS=Pan troglodytes OX=9598 GN=ALS2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002953 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00415 all species →	RCC1	Regulator of chromosome condensation (RCC1) repeat	Repeat	Interproscan
PF02204 all species →	VPS9	Vacuolar sorting protein 9 (VPS9) domain	Family	Interproscan
PF02493 all species →	MORN	MORN repeat	Repeat	Interproscan
PF13540 all species →	RCC1_2	Regulator of chromosome condensation (RCC1) repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000408 all species →	Repeat	Regulator of chromosome condensation, RCC1	Interproscan
IPR003123 all species →	Domain	VPS9 domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR009091 all species →	Homologous_superfamily	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	Interproscan
IPR051984 all species →	Family	Alsin GEFs and Motor Neuron Regulators	Interproscan
IPR037191 all species →	Homologous_superfamily	VPS9 domain superfamily	Interproscan
IPR003409 all species →	Repeat	MORN repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46089 all species →	ALSIN HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016197 all species →	Biological Process	endosomal transport	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan
GO:0031410 all species →	Cellular Component	cytoplasmic vesicle	Interproscan
GO:0043087 all species →	Biological Process	regulation of GTPase activity	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04575	ALS2; amyotrophic lateral sclerosis 2 protein	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.