Gene detail

Detailed information of ENSQPTP00000041853.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031562140.1, integrin alpha-6-like isoform X1 [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

ENSQPTT00000019426

ATGAATTATCAAGGTGTCATATTTTACAAGCAGAGAGGCGAGACGAAAGCCAAAGAGATGCAGAACACCTCATCTGCATTGGGCTATCAAGgTTTTTCAACTTCATATGGTTCTTTCTTCAAACCAAAACAAGTTGATATTGTGACTGGAGCACCACGTTTTAATCACTGTGGAATGGCTGTAGTGTTTGAGAGAGGTAGTGGTATCTATCCAGACTATCACCCCCGTAGGGTTATTCTTCCAACTGAAGAAGAGGGAAACCCACAACCTGGCTCAGGATTTGGTTACTCCGTTGCTGGAGTAGATGTTAACAATGACAGCCTGACAGATGTCCTAGTAGGAGCACCTTATTATTCTGTCAAGGATTCACCAAACGAAGGAAGAGTGTTTGTTTATATCAACAAGGGAAATGGAGTGTTCAAGAAGGAGATGGAGCTAGCACCAAGTGTCAAGAGGAGAATGGCTCAGTTTGGACATGTTGTAGCAAGAGTGGGCGACTTAGATCAGGATGGCTATGAAGATATTGCAGTAGGAGCTCCATATGAAGATATGAATGGCGTAGTTTACATATTTAATGGCTCTGCTGATGGGCTCTCCAAGAAGCCTGCAcagATTATAAAGTCTTCAGAGCTGCCTCAGAAGCCCAAAACCTTTGGATATTCTATAGCTGGACGTCTTGACTTAGATGAAAACGGCTACCCAGATATTCTGGTTGGTGCCTATGAATCAGACAGCGTATTTCTGTTAAGATCCAGGCCTATAATTGACATGCAAGCAAATATTACAATTACTCCAAATCCATTTGACATTAGGACCAAAACCTGTCCAGTGTTGTATAAAGGAAAAACTATCAATACAGCATGtATGGCAATTCAAATATGCTTAAGTTacaaggaaaggaaaaacaaaCTTAAAGATAAGTTAAGCATAGACTTAACTGTTGAGTCAGATGTTGAATATGTCCATCAGTCCAGGACAAAAAAAGAGGCTCGTATAATGTTTATAGCAACAGGAGGTCCTATCTATAACAAGACTTTAACAAACCTGCCTGTTGATCCAACCAAGGAATGCTTTGTTGAAAACGTTTTCTTGAGGGAGAATGTAGAAGATGTGTATCCCGATATaacattcaaaataaatttcCTAATGCATGAACCCAAGACTCCACCCACAGCCGCCCCTGATAAAATGCTGTCCTTGGCTGGATATGCAATGTTGGAGGAGAAACATAAGAATTTTGTGACAGCAGTGcTGAAGTTTAAGAGAGATTGTGTCAAGTGTGAACCAAACTTAAATCTGGCTAGTGCAAGTAAAAAGACTCTTGCAGTAGGAGCACAAGACTACAAACTAAATGTAACGATTTCCAATTCTGGCGAATCAGCCTATAACACAGAACTATTGATAACTGTTCCTGAAGGAGTCACTCAGAGTGCAGTCTATGATGCTAGTGAAAAACAAAAGGATCGCTTTACAATCAGTCATCTTGTTACCTCTGAAATACTTAGTGATAACAGTTCAAAGCTTGTCATACCTGTTGCCAACCCTCTTAAGAATTCTGTGACGAAAAGATTCCAAGTTCTACTTAATACTGCAAGCTTCAGCAAATCACAAGATTTCTTAGCTATAGATTTAGAAGTAATGAGCTCCAACAAAGAACCTGATAAGCACATGGCTGATAACAAGATACATTTAAATATTACTATTGTATCACGAGCTGACTTGGAACTATCTGGATCAACCAGGCAAGAACAGATTTACTATGGTGGAGAAGTAGTTGGTGAAAGTGCAATGGTTACTGAAGAGGATATTGGCAATGAAGTCAGGCACACATATATTGTACAAAACCTAGGACCAGATCTTGTGCCTGAAGCAGAAATAGTAATCAATTGGCCTTATGAAGCACCAAGTGGAAAACACTTGCTGTACCTCATGGAAGTCATGGTTGGTGGAAGAGGAGAGTGTGAATTCTTGCCGAATCAGATTAATTTACTTAACCTTTTGaaaaaagcaaaatcccaAGCATCCAGAAATGCAACAGCTAGAGATATTTCAATACGAAAAAGAAGAGATGCTCAACCAGAACCAGAAAAGAaagaatcaaaagaaaaacgagAAATGGCTGAGAAAGCTAAAGGACCAAAAGGAGTTGTTCTGGACTGTAATAATACTCCCTGTACTCCAATTAAATGCACCATGAAAAGACTGACCAAAGGTGATGCAGTATCTTTTGTCTTGAGGGCAAGGATATGGAATGGAACTCTTCTTGAGGACTACTATGGCAAAGAAGTGGAAGTTGTTTCCAGTGCGACTGTCAAAACATCTGTTTCTTTTGTAAGAGAAGTTgatgaaaacaacaacaaggcTGAGaTCCGTACCCTGTTTTTCCCAGACTTTCCTCCACCTCCTTCCAAAAAACTAGCTTCATGGGTCATTCCAGTAGCTGTGGTTGGTGCAGTACTAGCACTTCTTATCATCATTCTCATCCTTTGGAAGCTGGGATTCTTCAAGCGAAAAAGGTTTGATGGAAACTTGACAGAAGTAGAGGGAGAGGCCATGTTAGATTCCAAGCAAGAAAAGAAGCCTTTTGATCATTAA

Transcript

ENSQPTT00000019426

TGCACCTGGGTCTATGAATTATCAAGGTGTCATATTTTACAAGCAGAGAGGCGAGACGAAAGCCAAAGAGATGCAGAACACCTCATCTGCATTGGGCTATCAAGgTTTTTCAACTTCATATGGTTCTTTCTTCAAACCAAAACAAGTTGATATTGTGACTGGAGCACCACGTTTTAATCACTGTGGAATGGCTGTAGTGTTTGAGAGAGGTAGTGGTATCTATCCAGACTATCACCCCCGTAGGGTTATTCTTCCAACTGAAGAAGAGGGAAACCCACAACCTGGCTCAGGATTTGGTTACTCCGTTGCTGGAGTAGATGTTAACAATGACAGCCTGACAGATGTCCTAGTAGGAGCACCTTATTATTCTGTCAAGGATTCACCAAACGAAGGAAGAGTGTTTGTTTATATCAACAAGGGAAATGGAGTGTTCAAGAAGGAGATGGAGCTAGCACCAAGTGTCAAGAGGAGAATGGCTCAGTTTGGACATGTTGTAGCAAGAGTGGGCGACTTAGATCAGGATGGCTATGAAGATATTGCAGTAGGAGCTCCATATGAAGATATGAATGGCGTAGTTTACATATTTAATGGCTCTGCTGATGGGCTCTCCAAGAAGCCTGCAcagATTATAAAGTCTTCAGAGCTGCCTCAGAAGCCCAAAACCTTTGGATATTCTATAGCTGGACGTCTTGACTTAGATGAAAACGGCTACCCAGATATTCTGGTTGGTGCCTATGAATCAGACAGCGTATTTCTGTTAAGATCCAGGCCTATAATTGACATGCAAGCAAATATTACAATTACTCCAAATCCATTTGACATTAGGACCAAAACCTGTCCAGTGTTGTATAAAGGAAAAACTATCAATACAGCATGtATGGCAATTCAAATATGCTTAAGTTacaaggaaaggaaaaacaaaCTTAAAGATAAGTTAAGCATAGACTTAACTGTTGAGTCAGATGTTGAATATGTCCATCAGTCCAGGACAAAAAAAGAGGCTCGTATAATGTTTATAGCAACAGGAGGTCCTATCTATAACAAGACTTTAACAAACCTGCCTGTTGATCCAACCAAGGAATGCTTTGTTGAAAACGTTTTCTTGAGGGAGAATGTAGAAGATGTGTATCCCGATATaacattcaaaataaatttcCTAATGCATGAACCCAAGACTCCACCCACAGCCGCCCCTGATAAAATGCTGTCCTTGGCTGGATATGCAATGTTGGAGGAGAAACATAAGAATTTTGTGACAGCAGTGcTGAAGTTTAAGAGAGATTGTGTCAAGTGTGAACCAAACTTAAATCTGGCTAGTGCAAGTAAAAAGACTCTTGCAGTAGGAGCACAAGACTACAAACTAAATGTAACGATTTCCAATTCTGGCGAATCAGCCTATAACACAGAACTATTGATAACTGTTCCTGAAGGAGTCACTCAGAGTGCAGTCTATGATGCTAGTGAAAAACAAAAGGATCGCTTTACAATCAGTCATCTTGTTACCTCTGAAATACTTAGTGATAACAGTTCAAAGCTTGTCATACCTGTTGCCAACCCTCTTAAGAATTCTGTGACGAAAAGATTCCAAGTTCTACTTAATACTGCAAGCTTCAGCAAATCACAAGATTTCTTAGCTATAGATTTAGAAGTAATGAGCTCCAACAAAGAACCTGATAAGCACATGGCTGATAACAAGATACATTTAAATATTACTATTGTATCACGAGCTGACTTGGAACTATCTGGATCAACCAGGCAAGAACAGATTTACTATGGTGGAGAAGTAGTTGGTGAAAGTGCAATGGTTACTGAAGAGGATATTGGCAATGAAGTCAGGCACACATATATTGTACAAAACCTAGGACCAGATCTTGTGCCTGAAGCAGAAATAGTAATCAATTGGCCTTATGAAGCACCAAGTGGAAAACACTTGCTGTACCTCATGGAAGTCATGGTTGGTGGAAGAGGAGAGTGTGAATTCTTGCCGAATCAGATTAATTTACTTAACCTTTTGaaaaaagcaaaatcccaAGCATCCAGAAATGCAACAGCTAGAGATATTTCAATACGAAAAAGAAGAGATGCTCAACCAGAACCAGAAAAGAaagaatcaaaagaaaaacgagAAATGGCTGAGAAAGCTAAAGGACCAAAAGGAGTTGTTCTGGACTGTAATAATACTCCCTGTACTCCAATTAAATGCACCATGAAAAGACTGACCAAAGGTGATGCAGTATCTTTTGTCTTGAGGGCAAGGATATGGAATGGAACTCTTCTTGAGGACTACTATGGCAAAGAAGTGGAAGTTGTTTCCAGTGCGACTGTCAAAACATCTGTTTCTTTTGTAAGAGAAGTTgatgaaaacaacaacaaggcTGAGaTCCGTACCCTGTTTTTCCCAGACTTTCCTCCACCTCCTTCCAAAAAACTAGCTTCATGGGTCATTCCAGTAGCTGTGGTTGGTGCAGTACTAGCACTTCTTATCATCATTCTCATCCTTTGGAAGCTGGGATTCTTCAAGCGAAAAAGGTTTGATGGAAACTTGACAGAAGTAGAGGGAGAGGCCATGTTAGATTCCAAGCAAGAAAAGAAGCCTTTTGATCATTAACTATTTGGACCATAGGAATCATTGGTGGCCTTGCTTGCCTCTCTCAATACGAATTATAGACACCAGAATAGAATGGAAGTATTCTAGTTCAAAGATGTTTTTCACAAGTATGTCTTATGAAAAAGAGCATTTTATCCAAGATGAATAAGACATCGATGACTGAGTGTTGTATGGAAATGACATTTGGACAGAaaaatacatatacatatcCATATGAACACAATACAACAGTATCATTTCAAGACTGTAGGCTGTAAAGAATTCTGTCAAGACAGttatattaaatttttattgCATTATGGTTTGacatataattattttaaatacagGATTAGCTAAAGTTCATGGTGTTCAGCCATACATGTATGGCCAGTTTTTAGGCTTTAGGTAAGCTGTAAATAGCTGGGACTTCAATACTAGCTTCAAAGTCATCATTCATTTTCATGTGCCAGTATGCCAGTACCATGGGTCAGAATTTTTGACTTCAACAAACAAGATGCATTGTGGTCCAGCTTGAGTACAACAACACTATATAAGCAATATTTGTACACTTAGACTgcaatgcaccatgtttgcTCTCAGAAAACATCTATGTTTATTGTTACGTTTAATTTCAGACCAATTTGTCACCACTTCTTCATGAAACAGTTtttaaccagtttgaattCATGCAGCTTGCAATCTTAAGATTGAATTTTGTCCCTGTTTCATGTTACTGTGAGGTgtggtgtagtgtagtgtgaTGTGTATATAACTGTGTGTAGGTCAAGTGAACACACGTTAAGCAGAATTAGTAATTTATAACATTTGTCAAAGTTTTACCTTCCTAAAAGAAACTAGTTTCAAGCTTTATAGTCAGTAATAGCAGATCATAATCTCCCCTACAAGATGTAAAAAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P23229	Integrin alpha-6 OS=Homo sapiens OX=9606 GN=ITGA6 PE=1 SV=5
Q61739	Integrin alpha-6 OS=Mus musculus OX=10090 GN=Itga6 PE=1 SV=3
P26007	Integrin alpha-6 OS=Gallus gallus OX=9031 GN=ITGA6 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000604 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08441 all species →	Integrin_A_Ig_1	Integrin alpha Ig-like domain 1	Domain	Interproscan
PF20806 all species →	Integrin_A_Ig_3	Integrin alpha Ig-like domain 3	Domain	Interproscan
PF20805 all species →	Integrin_A_Ig_2	Integrin alpha Ig-like domain 2	Domain	Interproscan
PF01839 all species →	FG-GAP	FG-GAP repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013649 all species →	Domain	Integrin alpha, first immunoglubulin-like domain	Interproscan
IPR000413 all species →	Family	Integrin alpha chain	Interproscan
IPR032695 all species →	Homologous_superfamily	Integrin domain superfamily	Interproscan
IPR018184 all species →	Conserved_site	Integrin alpha chain, C-terminal cytoplasmic region, conserved site	Interproscan
IPR028994 all species →	Homologous_superfamily	Integrin alpha, N-terminal	Interproscan
IPR048286 all species →	Domain	Integrin alpha, third immunoglobulin-like domain	Interproscan
IPR048285 all species →	Domain	Integrin alpha, second immunoglobulin-like domain	Interproscan
IPR013519 all species →	Repeat	Integrin alpha beta-propellor	Interproscan
IPR013517 all species →	Repeat	FG-GAP repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23220 all species →	INTEGRIN ALPHA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0008305 all species →	Cellular Component	integrin complex	Interproscan
GO:0005178 all species →	Molecular Function	integrin binding	Interproscan
GO:0007160 all species →	Biological Process	cell-matrix adhesion	Interproscan
GO:0007229 all species →	Biological Process	integrin-mediated signaling pathway	Interproscan
GO:0009897 all species →	Cellular Component	external side of plasma membrane	Interproscan
GO:0033627 all species →	Biological Process	cell adhesion mediated by integrin	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06487	ITGAV, CD51; integrin alpha V	-	CD molecules	ko04090	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.