Gene detail

Detailed information of ENSQPTP00000043136.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031551244.1, uncharacterized protein LOC116288582 isoform X1 [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

ENSQPTT00000004927

atggcgtccaGCTGTAAAGAGGATCTAGATCAGTTGCTGGCAGGTCTTGCTTCCATGGGGTTTGAGCTGGATGACTGTCAAGAAGCACTGCTAGCTGGTCATATTACGCTTGAATCTGCAGTGGAATGGCTGGTGGAGAAGAAAACCAATCCCTCTGCCACAACAGCTGGAAGAAGTGACAAGAACTTACAGGAGAATAAAGAACCATCTGGCAGTGGTATATTTGAACAGCAGGAAATAGGATCAGCTGACCATCAGGTTTCAAGTAGATATTCACTGacagaggaaggaaggaaagccAGGGAAAGATttatagaaaaagaaagagaagtaGCTCGAACTGAAGCTAAAAAGCGCAGactggaagaaaagaaagctaaagaaCAGATACTTATGCAGATTGCAGATGACCgggaaataagaaaattgaaaTCTGGTATTAAATCTGAGACAGTATCAGAAAAAGCTTCACCAGCAGAAGAGGGTACAAGCACCAGTCAGTTTTCCAAAACCACCAAGAAGGAGTGTTTGATGTGTAGGCTACAGgtTAGGTTACCAAGCAGCCAAGTTAAAAAGGGCAATGTACCAGTCAAGACCAAACTAGAGCAAGCAGTCACTTTAGTGTGTAGTGACTCTTCTCTCAGAACTGGGGAGGTAGAAATACTCCAGCCATTTCCACGCAGGATTTTCACTGCAGTTGAATTGGAGTCCACTTTGGAAGAACTAGGTCTGTGTCCATCAGCTATGGTCGTCGTACAGAAAAAGAACCGTCATTCACTAGCCACAGACCTTAGCTCTGGCACAGCTTCTGCCCATTTGGTGGAGCCACCAGAAGCTGAGCAAGGAGTTGCTGGAGCAGAAGGAGATGGACCAAGTAGCAGTGACAGGGGCAGAGTCCAACCTGGTGTCGAAGTTGGTCTAGAAAGAATAATCAATGACCTTCCAAACCCTCCTGGTTTGGACATTCCTGGTATTGGAAGAAACCAACCACGGCAGCATCAGTGGGGAGAGGGAATGAGACTAGGAGCAGTTAATTACAATCCTCATGCTATGGAACCTGTCTTACAAGCTAATTCAGCTGGAGAATCTGCTGCAAGGAGAATGGAAATGAGAGCACAGCTGCTGCAGCACAGGCTGGCTGATGCTGCTAAAAGTCCTCCACCAGAACAACCCCACCTCCACAGAGAAGTGAGAAGCTTAGAGACGATCTGTATAGACAACATTGTTTTAAGGCTAGCAGGGCACCCACATTTACAGCCATTAACCACATTAGGGACTCTACCTCACAAGGTGTGTGACAAGATAATACACCAGCTAATGAAGAGCAAAGCTCTCTCACCAAAAACAATGCAAGCCTTCTTATCCTGCTGTCTTCGATATCTTAAGCTGGATTGCTACTTGTTGGTAACAAATGAATTGCTTACTGTACTGAGACTTCACAAGCATCTGACATTACTAAGTCTCAAGTCTTGTCCCTTAATTACTGACAAAGCAATGGAGGCTGTGTCAGCTCTAAAGAAATTACAGTCGTTAAACTTAAACCAGTGTTCACAACTGACAGACAAATGTTTTACTTACATTAAGGACTTACCTTCTTTAACTGTGCTTCAAATGGACAACACCAAGGTTACAGATCAAGgggtttgttattttgttgccAATGCCAGCTGTGCCAGTAACCTCATACACCTCAATCTTTGCAGTACTGATATAACAGACTTAAACTTAGATGTTCTAAAAGATTTAAAGTCACTAAAGATTCTTGGGTTGGAGAATACAAAGATTACCAGGTTGGATGTTCTGTCAGGCCTTAGCTATCTGGAAAGTCTAAATGTGTCCCATACAGAAGTATCAAACAACAGTATGGCATCACTCACTGGTTTGCCATGCTTAGTGTCACTCAATATTCTGTCCACTGCTATTGATGACCTAGGACTGCAATATCTTCATGatCTACGATTAACTCATTTGAAGTTACCTGGGAGACTTAATATAACTGACCAAGGGATACAGCACATTCAAGGTCTACCACTTGCTGCATTAGATTTGTCAGATTATATCAATGTAACAGATGTTGGAGTTCATTGCATCTCAACAATGTACAGCTTGACAAAGCTGACACTGAGTAACACCAAACTAACAGATGTGGGAATGTTGAGTCTATCagGACTGACTGAGCTTGTAGAGTTGAATGTTGATAGAACAGCAGTGACAGATGAAGGATGCATGGTTATCAGTAACTTTCCAAATCTTCAAATTCTCAGCCTTTCTTCTACACATATAAGCAACAAATTTCTAACATGTGGTGTGCTTAATCAGTGCTTAAAGCTGAGCCAATTAAACTTGAGTAGAACTCGAGTGTCCAACAAGGGAATAAGGTGTCTTAATCTTAACTGTCTGACTTCACTCAACCTGGACTGGACAAGCGTCACATCTGATTGTCAACTGTTGCTTACAGGCTGTCCAGCTCTTAAAGCACTGCGAACAAACAACTGTACCCCTTCCATGGACGAGTCTGATGAAGAGGAAGTTTAA

Transcript

ENSQPTT00000004927

AGAATGTATAAGTGTAGCTTTATTGAAGAAATCTTTATTGAAGGTTTCTTTGGTACAAATAAGATTGTTATTTTTCCTGGTATCACTTTCTCTTTACACTACGCTATAAAATAGGAAGAAGTACCGCTGAATCAGGCGCAcaaacaagatggcgtccaGCTGTAAAGAGGATCTAGATCAGTTGCTGGCAGGTCTTGCTTCCATGGGGTTTGAGCTGGATGACTGTCAAGAAGCACTGCTAGCTGGTCATATTACGCTTGAATCTGCAGTGGAATGGCTGGTGGAGAAGAAAACCAATCCCTCTGCCACAACAGCTGGAAGAAGTGACAAGAACTTACAGGAGAATAAAGAACCATCTGGCAGTGGTATATTTGAACAGCAGGAAATAGGATCAGCTGACCATCAGGTTTCAAGTAGATATTCACTGacagaggaaggaaggaaagccAGGGAAAGATttatagaaaaagaaagagaagtaGCTCGAACTGAAGCTAAAAAGCGCAGactggaagaaaagaaagctaaagaaCAGATACTTATGCAGATTGCAGATGACCgggaaataagaaaattgaaaTCTGGTATTAAATCTGAGACAGTATCAGAAAAAGCTTCACCAGCAGAAGAGGGTACAAGCACCAGTCAGTTTTCCAAAACCACCAAGAAGGAGTGTTTGATGTGTAGGCTACAGgtTAGGTTACCAAGCAGCCAAGTTAAAAAGGGCAATGTACCAGTCAAGACCAAACTAGAGCAAGCAGTCACTTTAGTGTGTAGTGACTCTTCTCTCAGAACTGGGGAGGTAGAAATACTCCAGCCATTTCCACGCAGGATTTTCACTGCAGTTGAATTGGAGTCCACTTTGGAAGAACTAGGTCTGTGTCCATCAGCTATGGTCGTCGTACAGAAAAAGAACCGTCATTCACTAGCCACAGACCTTAGCTCTGGCACAGCTTCTGCCCATTTGGTGGAGCCACCAGAAGCTGAGCAAGGAGTTGCTGGAGCAGAAGGAGATGGACCAAGTAGCAGTGACAGGGGCAGAGTCCAACCTGGTGTCGAAGTTGGTCTAGAAAGAATAATCAATGACCTTCCAAACCCTCCTGGTTTGGACATTCCTGGTATTGGAAGAAACCAACCACGGCAGCATCAGTGGGGAGAGGGAATGAGACTAGGAGCAGTTAATTACAATCCTCATGCTATGGAACCTGTCTTACAAGCTAATTCAGCTGGAGAATCTGCTGCAAGGAGAATGGAAATGAGAGCACAGCTGCTGCAGCACAGGCTGGCTGATGCTGCTAAAAGTCCTCCACCAGAACAACCCCACCTCCACAGAGAAGTGAGAAGCTTAGAGACGATCTGTATAGACAACATTGTTTTAAGGCTAGCAGGGCACCCACATTTACAGCCATTAACCACATTAGGGACTCTACCTCACAAGGTGTGTGACAAGATAATACACCAGCTAATGAAGAGCAAAGCTCTCTCACCAAAAACAATGCAAGCCTTCTTATCCTGCTGTCTTCGATATCTTAAGCTGGATTGCTACTTGTTGGTAACAAATGAATTGCTTACTGTACTGAGACTTCACAAGCATCTGACATTACTAAGTCTCAAGTCTTGTCCCTTAATTACTGACAAAGCAATGGAGGCTGTGTCAGCTCTAAAGAAATTACAGTCGTTAAACTTAAACCAGTGTTCACAACTGACAGACAAATGTTTTACTTACATTAAGGACTTACCTTCTTTAACTGTGCTTCAAATGGACAACACCAAGGTTACAGATCAAGgggtttgttattttgttgccAATGCCAGCTGTGCCAGTAACCTCATACACCTCAATCTTTGCAGTACTGATATAACAGACTTAAACTTAGATGTTCTAAAAGATTTAAAGTCACTAAAGATTCTTGGGTTGGAGAATACAAAGATTACCAGGTTGGATGTTCTGTCAGGCCTTAGCTATCTGGAAAGTCTAAATGTGTCCCATACAGAAGTATCAAACAACAGTATGGCATCACTCACTGGTTTGCCATGCTTAGTGTCACTCAATATTCTGTCCACTGCTATTGATGACCTAGGACTGCAATATCTTCATGatCTACGATTAACTCATTTGAAGTTACCTGGGAGACTTAATATAACTGACCAAGGGATACAGCACATTCAAGGTCTACCACTTGCTGCATTAGATTTGTCAGATTATATCAATGTAACAGATGTTGGAGTTCATTGCATCTCAACAATGTACAGCTTGACAAAGCTGACACTGAGTAACACCAAACTAACAGATGTGGGAATGTTGAGTCTATCagGACTGACTGAGCTTGTAGAGTTGAATGTTGATAGAACAGCAGTGACAGATGAAGGATGCATGGTTATCAGTAACTTTCCAAATCTTCAAATTCTCAGCCTTTCTTCTACACATATAAGCAACAAATTTCTAACATGTGGTGTGCTTAATCAGTGCTTAAAGCTGAGCCAATTAAACTTGAGTAGAACTCGAGTGTCCAACAAGGGAATAAGGTGTCTTAATCTTAACTGTCTGACTTCACTCAACCTGGACTGGACAAGCGTCACATCTGATTGTCAACTGTTGCTTACAGGCTGTCCAGCTCTTAAAGCACTGCGAACAAACAACTGTACCCCTTCCATGGACGAGTCTGATGAAGAGGAAGTTTAATGCAGGAATTTTGGTGGAAAACATGCtataaaaaagttttaaaacacCAATAATTTAAAGattcattttaatttataGTTCTAAAGTGAATACATgcaccgaatcgaaatatggtgaccaatttgaataactctTGTTCTgtactgactagcgactgactagcctctaaTACATGTCAAAATGTTAGTGCagaataatagttatttgaaTTGGTCATCATATTTCGATTTGGTGTAAAGAAAAATGTAATTTCTTCAGTCGAAGGGTGAATTAGTAAAAAGGCATGACGAAAAATGAGAACCAAAAATGACAACTACAACAAAGTGAATCAAGTGTTTCAAAAACGTTATCGTTATAGCAACTCAGATTTTATTAAGTTTTTATggttaatattaataaagatatttattttcttaatcttttttattcgtaaatgattgattttggttgggatacctgtgttgCTTTAAAGCACAGGAACCCCAACTCTCGAAAATATGCACTAGTTAtggataaatatttatttatattagcTCGGAGGAAATCCCGATTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q922Y1	UBX domain-containing protein 1 OS=Mus musculus OX=10090 GN=Ubxn1 PE=1 SV=1
Q499N6	UBX domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Ubxn1 PE=3 SV=2
Q32KW2	UBX domain-containing protein 1 OS=Bos taurus OX=9913 GN=UBXN1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005973 (this species only)
Ubiquitin family	ULD\|UFD\|UBX · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00789 all species →	UBX	UBX domain	Domain	Interproscan
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009060 all species →	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR001012 all species →	Domain	UBX domain	Interproscan
IPR015940 all species →	Domain	Ubiquitin-associated domain	Interproscan
IPR051341 all species →	Family	Zyg-11-related ubiquitin ligase adapter protein	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR006553 all species →	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12904 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSQPTP00000043136.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.