Gene detail

Detailed information of ENSQPTP00000043423.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031563060.1, WD repeat-containing protein 1-like [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

Transcript

ENSQPTT00000001740

TTGGGTATATATAGGGAGGAGTACTGACCGGTTCTCAAGTTGGAATAATATTCTGATTCACATCCAACTTTGAAAGCTgcaaaatatgtcttttgaaGGAAAAGCTGTGTTTGCTTCTCTCCCAAGAGTGAAACGAGGTATACCGACGGTCCTCAAGGGTGATCCCAAGGGAAAAAATATCCTCTATACCAACGGGAAAAGCGTATTTATACGAGACATTGAGAACCCAACTGAATGCGATGTGTATTCCCAACATGCTaaagacacgacaatagctgtTTATGCTCCAAGTGGATTTTACATTGCATCTGGTGATATTTCTGGGAAACTGCGTATTTGGGACACCACCCAAAAGGAACATATCTTAAAGTATGAATATCAGCCGCTTGGAAGAGCAATCAAGGACCTCGCATGGTCGCCTGATAGTAAGAGGATTGTCACTGTCGGAGATGGAAATGAAAAGTATGGTGCTGTGTTCTTGTGGGACAGTGGATCTAACGTGGGAACTATTGAACAGCACATGAAACAGATTAATGCTGTCGATTACAAATCATCACGACCTTACCGTATTTGTACAGCCAGTGAGGATTTTGCAGTCAACTTCTACGAAGGACCACCATTCAAATTCAAGCACAGAAATTCGGAACACACCAACTTTGTCAACTGTGTGAAGTACTCTCCTGATGGTAGTGTATTTGTTTCTGGTGGAGCTGATGGAAAGGTAGTGTTATATGATGGAAAAGAGGGCACGGTGGTTGATGAGTTTGGTAAGAGTGAACCCAATGGAAAGGCCCACAAAGGAGGGGTTTATGGAGTATCTTTTAGCCCCGATGGAAATCAATTCTTAACTGCCTCTGCAGATCGTACCTGCAAAATTTGGAATGTGCCTGACCGAACCCTCACCACGACATTCAAGTTTGGCTCAGACCTAGAAGACATGCAGGTTGGATGCTTGTGGCAGGGTGAAAACCTTATTTCAGTATCCCTATCTGGTTACCTTAACTACCTGGACCAGGAAAACCCTGACACACCCAAGAAGATTATTATGGGCCACTACCAAAATATCAGTGCAGTTGCAACCTCCATAGAAAGAAAGAGGATCTACTCAGCCAGCTTTGATGGCAGAATAATCAGCTGGGATGCCGATGGTAATGGTAGAGTATTCAAGGGTAAAGGACACACAAATGAGATCAGATACATGGCAGTTGATCAAGAAAACCTGGTCACCTGTGGTCTTGATGACACAATAAGATTTACCAGCCTTGAGACTGAGACATTTGGGTCAGATGTAGTATCACTGGATGGTCAGCCCCAAGGACTTGGTCTTGGAAAAGATGGTCTTGTTGTTGTACCATTAGTTGAGGAGGTTGTAGTGATCCGTAACAAGAGGATTGTTTCCAGGCTTAAAGTTCACTACGAGCCAAGTGGTGCCTCTATCCACCCTGGACAAAATGAAGTTGCTATTGGTGCTAAATTTGAAAGATGTGTTTACATCTACACCCTTGAGAATGATACCCTGGTAGAGAAGACAAAAGCAAATGTTGAGGGTGGCAGTGGGGTGCTTCTTGTTGGCTATTCACCTGATGGGGCATACTTGGGTATCTCTAATGATAGCAAGAAGAGCTACTGCTTAACTACTAGTGACTACAAGGATATTAGTGGAGAGTGGTACGGACATGCTGCAAAAATATTCTCCCTTGCCTGGTCACCGGACTCTAAATTCATGGTCACTGGAGGATTGGACTCGCATATTTTCATCTACAAACCAGAAGAACCCAAGAAAAAGGCAATGAGCATCAAATttgCTCACCCTCAGAGTCCTGTAACCTGTGTCGCATGGCTTGATAACACTACCCTAGTATCTGGTGCCCAGGATTGTTGTTTGAGGATATGGGGATTTAAAGCCTGAAGACAGACTGCGTGGTGACATGTTACATACAAGACAATCAAGTTGCGTTCAGAAATTATCCAATAATCtgcaataaataattataaaactcAAATGAATATGTTTTTGCACAAGTTAGAAGTCATTCTAGATTTGAACAGGAGATATTAACATTGTATACAAACAGTAATTTTAAGAGAATTAAGCCAGACAATAACAAAAGATAGTTgtattttcattctctttgGTGATGTAAGCTGTTTTATAAAAcacatttttcaataaaaatagcTATCGTAATATTCTATAATGGGAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O93277	WD repeat-containing protein 1 OS=Gallus gallus OX=9031 GN=WDR1 PE=2 SV=1
Q6PAX7	WD repeat-containing protein 1-B OS=Xenopus laevis OX=8355 GN=wdr1-b PE=2 SV=1
Q6DIF4	WD repeat-containing protein 1 OS=Xenopus tropicalis OX=8364 GN=wdr1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005428 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR011045 all species →	Homologous_superfamily	Nitrous oxide reductase, N-terminal	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19856 all species →	WD-REPEATCONTAINING PROTEIN WDR1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0030042 all species →	Biological Process	actin filament depolymerization	Interproscan
GO:0030864 all species →	Cellular Component	cortical actin cytoskeleton	Interproscan
GO:0040011 all species →	Biological Process	locomotion	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24736	WDR1, AIP1; WD repeat-containing protein 1 (actin-interacting protein 1)	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.