Gene detail

Detailed information of ENSQPTP00000043429.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031568820.1, LOW QUALITY PROTEIN: DExH-box ATP-dependent RNA helicase DExH16, mitochondrial-like [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

ENSQPTT00000001677

ATGTCTATATTgagaaattattttattcagtCTTTCCTGCACATAAGTCGTAAAACTTTATCGTCAACTACAGTTTTCTTCTCGTGGCAGCCTTTCAAAACTTTGCCAAAACTACACGTGAACTGCTTGAGTTATTTCATTACTTCTCAAGATATTGAAAGTAAGACGTGTGCGTTTTCGAAAAAGAGAAACAAATGCACTCTCTGGACTCCTGTTTGCAAGCTTCAACATTCTGCTTTTACTAAAAGTAGTTTTTACAAACCTTTGAGCATTAAGCTGACCGCTGTTGCAAGCGAGTTGCACTTCAAACATGGATGTAGAAAATGGAGTAGTTCGTCCTTCAATAAACGCAGAGGAAGGAGAAAAGGAAGGACGTTCAAAAGAGAAAATGGTAGTAAAACAGAGCTATGTGCAAAAAATAAACCCttggtaaagaaagaaaaatttgaCAATTATGTACCTAAAGACCAGTTTGATGCCAAGGAAGATGACTGTGTTGATGTGGAGATAATAAACCTGCCTCTTGTTGGTGGAGAAAGGTTTTTACCATATAAACTGCATAAAGGTGAAATAGACAGCATTATGTGGGAGTTCCAGgcagatgaaagaataaaggaTGCAGCCAAGAATGAAGGCCTTAATGATCATCAATTCAAGAAAGCAACAAATTTATTTAGAAAAAGAATGAGAACACAGTTTAGAAAATATGTTGGTCTGCACAGTGTTATGTGTGCTATTAATTCCGATCATGCACATTTGCATGATTTATTTCCATTCTTCTTGAAACATGCAAATGAACTTTATCCAACACGAAACTGTGACATAGAAATAGTGAAAAGAATCTCTGACCTGCGAGGACCCCATGATCTATTTCCAAAAGCtcgaaaattaaaaagaaaaatcttctACCATGCCGGTCCTACCAATAGCGGCAAGACACATACTGCTCTAGAAAGATTTAGAGCGTGTAAGTCAGGAGTTTACTGCTCACCTCTTAGATTGCTTGCAGCTGAAGTATACAAGAGAACCAACAATGCTGGTGTTCCATGTGACATGCTGACTGGAGAAGAGAGGCTTTGGGCTGTTTCAGCAGAGGAGCCATCATCACATGCTGCTTGTACAGTAGAGATGACAAGTACAAACATTCCTTATGAATGTGCAGTTATTGATGAGATTCAAATGATGAGTGATCCAAGGCGTGGCTGGGCGTGGACCAGAGCATTACTAGGACTTGTGAGTGAAGAGATCCACCTATGCGGAGAAGACACAGCTATAGAATTGATACAAAGTATGGCTGACATCTGTGGTGATGAACTGGAGGTGCTGAGGTACAATCGCCTAGGACCTCTTACAGTTTCTTCTAGGCATCTAGGAGGTAATCTCACACGTGTCAAGCCAGGTGACTGCGTGGTGGCCTTTTCCCAAAAAGAACTGTTTACTATTCGTCAACGCATCGAGAAAGCAACACACAACAAGTGCGCCATCGTGTATGGCGGCCTTCCCCCTGCAACCCGTGTAGAGCAAGCATCGAAGTTCAATGATCCCGAGAGTGAGCAGAAGATACTGGTCGCTTCTGACGCAATAGGAATGGGGCTAAACTTGAATATCAAGCGCATTGTCTTTAACACTGTGCAAAAATATGACGGGTACTCGATGGATGAGTTGACCCCTTCTCACGCCAAACAGATCGCTGGTAGGGCAGGAAGATATGGATCTGAACATCCAGAGGGAGAAGTAACCACGTTATATGGCAGAAATTTCAGTACGCTGAAAAAACTCTTGAACACACCATCAGAGATGGTTCAGGCAGCAGGTCTGGCGCCCACTGTTGAGCAAATCGAAATGCTATCCTACCAATTGCCAGATGCCGGTCTCTCCCGCCTCTTGGAGGTGTTTCTAAATGTGGTACAGTTAGATGGGGACAAATACTTCATGTGTGATCTGGAAAGTGTGAAGTATTTGTCTGATCTTATTGATGGCGTCCCTTTAACAATATCTGAACAGTACACCATTAGCCAAGCACCAGTTAACATCAATAAAAACCTGTCATCTGCAATGGTAGTAGAGTTTGCACGATATATCAGTAAGCAAATGGCGCTGTCGAGTAGGACCCTGAAAGCCATGATCTCCTGGCCACCTACGATGCCAAAGACACTGAAAAGCCTTCAAGACACCGAGGCATTACATGAAGTCTGTGATGTGTATCTTTGGCTAAGctATCGTTTTCCAGAGACTTTCGTCGATCAAGAAGATGTGCGCAACATGCAGAAGTTTATCGAAAATGTTATTGGTGCAGCTGTGACGTCAAACTTAAAACAGCGACGTGTACCCAGACCTCCACGACAACAAATGGACGAGACGCCACCAATCTCTTCGAAATGA

Transcript

ENSQPTT00000001677

CAAGGCGCGCAAAACCTCTACATTTTCTTGTctcatatataaaaaaatacttcttcattttaaaCCTCAGTGTTAGGGAACAAGAAGCGGAGTCATGTCTATATTgagaaattattttattcagtCTTTCCTGCACATAAGTCGTAAAACTTTATCGTCAACTACAGTTTTCTTCTCGTGGCAGCCTTTCAAAACTTTGCCAAAACTACACGTGAACTGCTTGAGTTATTTCATTACTTCTCAAGATATTGAAAGTAAGACGTGTGCGTTTTCGAAAAAGAGAAACAAATGCACTCTCTGGACTCCTGTTTGCAAGCTTCAACATTCTGCTTTTACTAAAAGTAGTTTTTACAAACCTTTGAGCATTAAGCTGACCGCTGTTGCAAGCGAGTTGCACTTCAAACATGGATGTAGAAAATGGAGTAGTTCGTCCTTCAATAAACGCAGAGGAAGGAGAAAAGGAAGGACGTTCAAAAGAGAAAATGGTAGTAAAACAGAGCTATGTGCAAAAAATAAACCCttggtaaagaaagaaaaatttgaCAATTATGTACCTAAAGACCAGTTTGATGCCAAGGAAGATGACTGTGTTGATGTGGAGATAATAAACCTGCCTCTTGTTGGTGGAGAAAGGTTTTTACCATATAAACTGCATAAAGGTGAAATAGACAGCATTATGTGGGAGTTCCAGgcagatgaaagaataaaggaTGCAGCCAAGAATGAAGGCCTTAATGATCATCAATTCAAGAAAGCAACAAATTTATTTAGAAAAAGAATGAGAACACAGTTTAGAAAATATGTTGGTCTGCACAGTGTTATGTGTGCTATTAATTCCGATCATGCACATTTGCATGATTTATTTCCATTCTTCTTGAAACATGCAAATGAACTTTATCCAACACGAAACTGTGACATAGAAATAGTGAAAAGAATCTCTGACCTGCGAGGACCCCATGATCTATTTCCAAAAGCtcgaaaattaaaaagaaaaatcttctACCATGCCGGTCCTACCAATAGCGGCAAGACACATACTGCTCTAGAAAGATTTAGAGCGTGTAAGTCAGGAGTTTACTGCTCACCTCTTAGATTGCTTGCAGCTGAAGTATACAAGAGAACCAACAATGCTGGTGTTCCATGTGACATGCTGACTGGAGAAGAGAGGCTTTGGGCTGTTTCAGCAGAGGAGCCATCATCACATGCTGCTTGTACAGTAGAGATGACAAGTACAAACATTCCTTATGAATGTGCAGTTATTGATGAGATTCAAATGATGAGTGATCCAAGGCGTGGCTGGGCGTGGACCAGAGCATTACTAGGACTTGTGAGTGAAGAGATCCACCTATGCGGAGAAGACACAGCTATAGAATTGATACAAAGTATGGCTGACATCTGTGGTGATGAACTGGAGGTGCTGAGGTACAATCGCCTAGGACCTCTTACAGTTTCTTCTAGGCATCTAGGAGGTAATCTCACACGTGTCAAGCCAGGTGACTGCGTGGTGGCCTTTTCCCAAAAAGAACTGTTTACTATTCGTCAACGCATCGAGAAAGCAACACACAACAAGTGCGCCATCGTGTATGGCGGCCTTCCCCCTGCAACCCGTGTAGAGCAAGCATCGAAGTTCAATGATCCCGAGAGTGAGCAGAAGATACTGGTCGCTTCTGACGCAATAGGAATGGGGCTAAACTTGAATATCAAGCGCATTGTCTTTAACACTGTGCAAAAATATGACGGGTACTCGATGGATGAGTTGACCCCTTCTCACGCCAAACAGATCGCTGGTAGGGCAGGAAGATATGGATCTGAACATCCAGAGGGAGAAGTAACCACGTTATATGGCAGAAATTTCAGTACGCTGAAAAAACTCTTGAACACACCATCAGAGATGGTTCAGGCAGCAGGTCTGGCGCCCACTGTTGAGCAAATCGAAATGCTATCCTACCAATTGCCAGATGCCGGTCTCTCCCGCCTCTTGGAGGTGTTTCTAAATGTGGTACAGTTAGATGGGGACAAATACTTCATGTGTGATCTGGAAAGTGTGAAGTATTTGTCTGATCTTATTGATGGCGTCCCTTTAACAATATCTGAACAGTACACCATTAGCCAAGCACCAGTTAACATCAATAAAAACCTGTCATCTGCAATGGTAGTAGAGTTTGCACGATATATCAGTAAGCAAATGGCGCTGTCGAGTAGGACCCTGAAAGCCATGATCTCCTGGCCACCTACGATGCCAAAGACACTGAAAAGCCTTCAAGACACCGAGGCATTACATGAAGTCTGTGATGTGTATCTTTGGCTAAGctATCGTTTTCCAGAGACTTTCGTCGATCAAGAAGATGTGCGCAACATGCAGAAGTTTATCGAAAATGTTATTGGTGCAGCTGTGACGTCAAACTTAAAACAGCGACGTGTACCCAGACCTCCACGACAACAAATGGACGAGACGCCACCAATCTCTTCGAAATGAGACCCTTGATTAATCACTAAGCCTAGGTGTGTACAGGAAaggaatttgttaaataaaatattgagttatccaacatggccgccctCACGTGACTTTGCAAGGAGTTCAGACCAGAGCACTCAGCTGTATACTGTATGGAATCAAATACAGAGATTGAGGAGACAAGAACTGTACAGACCAGAGCACTCAGCTGTATACTGTATGGATTCAGAGATAAAGATGGAGGAGACCAGAGCTGTAAGAGTACAGACCAGAGCACTCAACTGTATACTGTATGGATCAAAGCGTGCAGttcaaatatgcaaaataaagCCTTTATCAAAATACTTGGTTcgagacatcccaaagcatgTCTATATACTGAGACGTCGACGTCGACAAGGGTTATTTCATTGGTTTACTTTGAAAGACTTTCAAATCTTGCGGTAACTGTTCTTGGAAAACCGTGATTCCAACACAGCTTAGTCACTCAAGAACTTTATTTCTGAAGCCATCATTTGTTAAAACCATAGCCGTCTTTTATCTAGGAAATGCTTGACGCAAATGCAGCATGGAATGTGAGAGTCGTTGTTCTCCGTTAATTCACTTTTGAAATCAGCTGACGGACTCCCATAACTATTACACTGTGATATTGAACATTATTGATAAAGCCTTTAGCCATTTGGAATGGAACTACATTTACTGCAATCTATAGATTAAACAGGAACACACTTCAAGATAGAGATTTCGTCAGTGCCATCACTGATGTGCCTTGCTTGCCACCAGCACTTGAGAGTGCAACTATTTTGGTGAAGTGTAagattatttttggaaaatgtttaattCATGCGTCTGGAATCAAGATCTTGTTTAATTGTGTTTTGGTAGTAATAAGACACATTTGATCACGCTGAGCAACCTTTTATCTCGTTTTTTACCTTATATCTCGATGGTCTTATTATACTCAAACACTGGCAAAGCTGTGAGCCCTAATGAGCATTGCGAGGACAAGCTACAGAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZJT0	ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Gallus gallus OX=9031 GN=SUPV3L1 PE=2 SV=1
A4IG62	ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Danio rerio OX=7955 GN=supv3l1 PE=2 SV=1
Q5EBA1	ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Rattus norvegicus OX=10116 GN=Supv3l1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007002 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12513 all species →	SUV3_C	Mitochondrial degradasome RNA helicase subunit C terminal	Family	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF18114 all species →	Suv3_N	Suv3 helical N-terminal domain	Domain	Interproscan
PF18147 all species →	Suv3_C_1	Suv3 C-terminal domain 1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022192 all species →	Domain	Mitochondrial degradasome RNA helicase subunit, C-terminal domain	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR044774 all species →	Domain	Suv3, DEXQ-box helicase domain	Interproscan
IPR041453 all species →	Domain	Suv3, N-terminal	Interproscan
IPR041082 all species →	Domain	Suv3, C-terminal domain 1	Interproscan
IPR050699 all species →	Family	RNA/DNA Helicase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12131 all species →	ATP-DEPENDENT RNA AND DNA HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016817 all species →	Molecular Function	hydrolase activity, acting on acid anhydrides	Interproscan
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0000965 all species →	Biological Process	mitochondrial RNA 3'-end processing	Interproscan
GO:0006401 all species →	Biological Process	RNA catabolic process	Interproscan
GO:0045025 all species →	Cellular Component	mitochondrial degradosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17675	SUPV3L1, SUV3; ATP-dependent RNA helicase SUPV3L1/SUV3	EC:5.6.2.6	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.