Gene detail

Detailed information of ENSQPTP00000044075.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031568505.1, RNA-binding motif, single-stranded-interacting protein 1-like isoform X1 [Actinia tenebrosa]
Species Actinia mediterranea · all data for this species · gene families

Sequence

CDS

Transcript

ENSQPTT00000053341

TAATTACCGTCCAATTGTCAATGAGAGCTTTCACGGAAGGAGTGAAAGGTTTGCGTGTAGGAGGTGATAGTGAATGTAAAAGTTCGAGAGGTGATCTTTGGAAGGAGTCAGCGCGCACTCAGCTGTATGGCGGGAAACTAACTTTGATGGCGTTACAGTATTTACTTACTGACCAAAAACATAATTGAACCTAAGACAAAGATACAAGCAAATGAATCGAAGGCTTCGAGTATTTGGAATGAGGACGCGTACGTTACCTCGTAACTGCCTTTAGAAAGGAGAGGGTCGCGTATAATGAACGATTCTCAAAATACATCTCGTTCTCCAACAATGACGACAGACCGAGCTGCAAACCAGGACAGATCTCAAGCCAAGGAAAAGGACACCCAAAGATCTCCTGCCTCAGACGAAGTTGGAGGTCGACAGTGTGGTACTCCTGATGGAGGGCGACCTACAGAAGATGTTAGTGATAttgataacaaaataaaaaacctaCAAGACAAGGATGACAAAAAGCAGGCACAAGCAAGACAACagcaaaacaagagaaaactCCCAAGTAACATACCAAGACAGACTAAGTCACCAGTGTATAGTAGTCGTATAAAGCCCCAAAACCCTGGCACTGTCTGGCCTACTAGTTACCCCCCAGGTTGGCATTTTGGATTTAGGGCACCACAATTTCATGCACCCGCCCCTATGTATCCTGGATATCATCAGACTAACgcTTACTCTGTACAGCCTTCAAATTCTCCTGGATTAAGTAGTAGAAGTTCTAGTGATAGAGGTGACAGCTTACAAGATGGAGAGGAAAAACTCAGCAAGACTAATTTGTATATACGAGGGCTCAAGGCCAACACTACAGATGAAGACTTAGTTAGACTATGCCACAAGTATGGAACAATTATTTCAACTAAAGCTATTCTAGACAAAGATACTAATTTATGTAAAGgTTATGgctttgttgattttgaaagtCCAACAGCTGCACAGAAAGCAGTTGCTGCCTTAGTTAATAGAGGAATCCAAGCACAGATGGCAAAGCAACAAGAACAAGATCCTACCAATCTTTATATTCAGAATCTTCCACCTCATTATGATGAAGCTaTGCTGGAAAATATGTTTAGCAAGTATGGCAAAGTTATTTCTACAAGAATACTACGGGATAAAGACACTAACAGTAAAGGTGTTGGATTTGCAAGAATGGAGAGCTcagaaaaatgtgaattagTCATTAGAGATTTCAACAAAAAGAGTTTACCAGGATCTTTGCAAGAACTTGTGGTCAAGTTTGCAGATGGAGGTCCCAAGAAAAGACAGCCAGATCAAGCATGGCCAAGAAGTCAGCAAGAGAGTGGTCTCCAGGTTACTGGCTATGATCCTGTTGTACTGCAGAATGGTAGTAATACTAGAGTAATAACATCACATGGGGCAGCCATTCCAAGCCAGACTGCATATGTACAAGGTGTACCTGTGGCTGCCTACCAGTTACCAACAGGAGGAGGATGGGTGACGCCACAGCACTATCTTCAGATGCAGACTCAAATGCCTCATAGTCAACTTGCAGTCAGTCCAGGTACACTAGACCACAACGTAAGTGCAGTTCATCAGTCAGCGCTTGCCAATCAGATGAATCAAATGCACATCTCAGGCTCCCAGTATGTCACAAGTCCTGTCCATGGTTCATTCCCTCAAAGCTCTTGGCAAGTCGTTCAACATTCAGCTGGTCAGGGACATCCCCATCAGCATTATGTTGGCATGGAGGACCCTACAATGATAAGCAGTGACGTTAGTGACCCTGGGCCTCCCTTATCACCTCAGGCCGCTGCAGGAGTACATCAACAGATGCAAGAACAAGCATTAGACGAGCAACGCATGGCAGCATACCCAGCAGCTTATCAACAAAGATGGCAGTTGGATCCCGCACCAAGGTGAAGCAGTGGCATCCATGATTATGCGACGAATTTTGATGTTTGCGTCTAGGTAGTTGTCAGTAAATGTAAGTCATGTCTAGAATGTTTGTGTGTAGTGTGGTGTGTGTGCGCGCGATTTGGGTCGTTTAGTGCTTTAATCTCCTGGTCAAAGAAcacattcttattttttattttttatttccaagATGATAGCCTTTTATACGACAAAGAACAGATTATAACTAGTTTTCGATGATTGTGCGGGGCTATGAAGTACAGTGTAgctcaattatttttattgttcttAACGCTAACCGTTTCAAGCCTTCAGAGCTTTAGATATAAAAGGACTACAGGCTGTTGAGCTGGTTTTTATGAAACTAAGTACTTGATTCAAACACATCGTCCACGTTTGTAGACAATTATTAGACAAATACAGTCTCGATTCCCAAGGGCTAGATTTTCTTCTCGGTATTCAGTACCAAATACGGACCTCTTTAAGACTGATTCCTTCTGTTTAATCAAGAGTAATATTATTCTGGTTTGTCTCTCATTGGTTGAGAGTGAGAATGGATGATTGACCAACCAGGAGTAAGCTTTATTCTGGTGGTTTGTCTCCCATTGGTCGATAGGGAGAATGGTTGATTGACCAATTAGAAGTAAGGTCAATTCTGACTTGTCTCCTATTAATTGAGTGTGTCAATGAACGATTGACAAATCAGGACTAAGAATGAATGATAACTTGTCTGTTGACAAAAGCCCTGTGTTACTGAGAAGATAAACAAGAAATGACATCCCAAAGCAGCGGCTTTCAAATGACCGTAACGTTAAGGCAGgaagtttattattttataaagcaGTTCACTCTCAAATTGACTTTTGGATCATCTACGAAGCTGGTCGTCTTTAGAGAATTTCCTAGTTGTCTTAACTTTCCTAGCGTTTCAAAGTAATGGCTATTAAAATGAAATCGCAGgaataaaccttttttgacGAATTAGAATTGAAATCGATTTTTAGG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B3NGA1	Protein alan shepard OS=Drosophila erecta OX=7220 GN=shep PE=3 SV=1
B4PIS2	Protein alan shepard OS=Drosophila yakuba OX=7245 GN=shep PE=3 SV=1
Q8MSV2	Protein alan shepard OS=Drosophila melanogaster OX=7227 GN=shep PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002156 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR002343 all species →	Family	Paraneoplastic encephalomyelitis antigen	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR050441 all species →	Family	RNA-binding motif	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48034 all species →	TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:1990904 all species →	Cellular Component	ribonucleoprotein complex	Interproscan
GO:0005681 all species →	Cellular Component	spliceosomal complex	Interproscan
GO:0048026 all species →	Biological Process	positive regulation of mRNA splicing, via spliceosome	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24990	RBMS; RNA-binding motif, single-stranded-interacting protein	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.