Gene detail

Detailed information of ENSQPTP00000044306.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031571468.1, E3 ubiquitin-protein ligase ZSWIM2-like isoform X1 [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

Transcript

ENSQPTT00000053584

AGGAAATCCATAACAGTTGGACTCAAAATGCCTTGAAAGGCTCTACTATCTTCAACGTTTTCtagcttttttctttcaattctaATTATGTCTCGACAAGTTCCTTGGAGAAGAATATGTCCTGATGTAGTATGTCACCGTATTGAACAAGCAAATCAGGCTAGGATTTATTTGCTTCGAGAGACGGGCCCAACAGGGTTCTTGTTGAAGGAAGATGGCAACGACAAAAAATTCAAAGTATTTCTTGGTGACCAACACTCTTGCACCTGTAGTACGTTTATGAAAGAGAGAGAGTTATGTATACATATCCTTTGGGTGTTACTCAAGAAGTTTAGAGTGCCTAAAGAAAATGCAGTAATATTTCAGTTGTCCCTTGTGGAAAGGGAAATCAATGAAGTGATCCGAGGGGCATACCATCAATCCCATACCAGAAGAAAAGATGAAAGTCAGAACAATGTAAACCCATCTGATAATAGAAACAAACTGAAACAGAAAGAAATAACAGACGAAGACATCTGTCCTATTTGTCAAGATGAGCTATTGATGAAATCTGGGGAACCTCTTACTTACTGCAAgtATGGTTGTGGAAACAGTATTCATATTAAGTGCATGAAAGTCTGGGCAGAACATCAAAGATCTACAGGAGAAAAGATTATGAAGTGTCCTTTGTGTAGGGtggattttggctcatttcaGGAGATTCAAGATGAGTTCACCAAATCttctagaaagaaaacaagatcTGAGCGACAAGATGTACACCTTGGCGCTACCTGCCATAAGTGCAAAATGTCTCCTATCTCAGGAAAATGCTACAGATGTGCTGTTTGTATTGATTATCACCTGTGTCATCAGTGTTTTGCTTCAGATCATCACGTACAGCATTCCTTCCAGTTTAGACAGAATTCCAGTCATCGATGGAGACCTGCTTCACGGGTTACTCCCCTCCCTAATGCAGTGATGGAAAATCTTCAGGCAAGAGAGATAACAGATGCAGATTACGACTTGCTTCTACAGCTGGACAGGGCTTTAGCAGATCACGAAGGCGTACCAGGTCACGTGTTAACCACCTTACCTGTCGAAGTCTTAAGAGATCGCCATCCTTTGATAACAAGTAACACCATCTGTCAAGTCTGCCTCAGTAGTTTTCAACCTTTTCACTGCGTTAGAAAGCTGGCCTGTCATCATGCGTTCCATCGTGATTGCATAGACAACTGGCTTACTAGCCACTCCACATGCCCCGTCGATGGAGGGACTGTTAATGCTGTCCTACCCAATCAGCGAGGAGGATCTAATGAAGTCAGGTCACCTTTGACAAGAAAGGATAGAAGTAATAGACAAGGACTGTTAGtcaaaagaagagaaaggGGCTCTACAGAAAACAGTCAGATTCCCAGAAGTTTACCCAGTGACTTTTCGTTAAGTGGTTTAGGCATTGTGGTGCGAGATAGAAGCAGGGAAAGCAGCCCAAGTGAGAAAATCCGTAACTCCAACCACATCGACTGCTCTCCCCCACAAAGTCTTCTTCTAAGAAACCAAAGCGTCCAAAGAGAGCATATCATTTTTGACCCTCTAAACGGTTCCAAACCCCCTATAGCACCGACCGGTAGCCGTGAAAGGGGGGTACAACCACCTGTAGTATCGTCCAACACGGGGAGAGGAGCCAGAGCTAGTTCATATAGTAGCAGCTCTAGTAAACGAAAAAACAGTATTGGCAATCAAGTGGCAGTGAGGAGATGTTCCTTGCCATTGGAACAAAAAACTAGTTCGTTAGAAGATTTATCCCTGAATGCTACTGGACTAGCGATGTGTATGGACCGTCCAGCAAGACAAAAAGTATCTAAACAAAAATCTGGACAGTTAATACGCGGGAAACTCTCCAGCGCTCCAAAATCCAAGAATTCAGGCGCCATGGTATTGAATAGTGAACCCTTGGTTGCATCAGGACTAGCAATTCATCTTCCATCGGCAGAAATAGCCGATCTTGCTGAAGTAGATAGTTGAACTATTCCGAAAGATCATGATTACAAAGAGCGTTCTTTCGACAAAAGCTACCGGATTTGGAAATCCTATTCTTGATCTAGTCCAGTAGATCTTTTTGAGATGCGCGAGCGCTGTCAAAAGTATCGCGTGCTAAGATTAAAAAAcgaggcatttttgggcaagacTATTGAGCGCGCTATACCAAACACATACAAAACCTGGAAAATTATGTTAACGACGTACGGAATAATTTGAAGTATCGTTTAGTTGGGGAGCAAGATAATAATTTTTGTGGGGGAAATAGCTCACTGGCTTTAGACAACAACTtttcttcaagggttttaGAAATCGCCTTTAACTCTTTGGTTTCCAATGCCCGAAAATGCTTCGTTTTGATGTCTGCGCCAGCGATATTTATGAGAGCCATCCGTCAACTCGGAAATCGTCTATTCCGCTATTTAATATTGAGAGAATTGTGTGTTCCAAAAAAATATCGGTGaattaaaaatctaaattgtaaataaaacTAAGGGAAAAAACCTTTTAAATACGCCTATTTCAATGAACGTTATAATTGCCAAAGACGATAGTCGATATAAGCAATAGgaaataggtcattccaatTCCAAGattagctggaatgacttgtgtttctgcttcttattctcgtcaagaacatggaccttagtgttgagactgattcaatgttctttgtattcaacgaaaccatttatatgtcggaatgacctatGGACTTATaagacaacgttttttgaaataggtgtatatctTGAAACTTCAATGAAAGGGAAATAAATAGAATCTCCCTCAGTATttgtaataaaaatgaatagaaaGCTAAACTATAAAAACGGAAATAAAAAACCCTTATAAAATTTACGCTTCTAACACTACATTTTTTTATGTTCGAAACTGGAAGAGGTACAAAACCTTCACACAATTTTAGGATTTTGAAGTTTTGATTTATTAAActaggaccatacttccagacatcgagtg

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8NEG5	E3 ubiquitin-protein ligase ZSWIM2 OS=Homo sapiens OX=9606 GN=ZSWIM2 PE=1 SV=2
Q9D9X6	E3 ubiquitin-protein ligase Zswim2 OS=Mus musculus OX=10090 GN=Zswim2 PE=1 SV=1
Q570X5	RING-H2 finger protein ATL58 OS=Arabidopsis thaliana OX=3702 GN=ATL58 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007859 (this species only)
Ubiquitin family	E3\|E3 activity RING\|PHD · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13639 all species →	zf-RING_2	Ring finger domain	Domain	Interproscan
PF04434 all species →	SWIM	SWIM zinc finger	Domain	Interproscan
PF00569 all species →	ZZ	Zinc finger, ZZ type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000433 all species →	Domain	Zinc finger, ZZ-type	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR043145 all species →	Homologous_superfamily	Zinc finger, ZZ-type superfamily	Interproscan
IPR039903 all species →	Family	E3 ubiquitin-protein ligase Zswim2	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR007527 all species →	Domain	Zinc finger, SWIM-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21540 all species →	RING FINGER AND SWIM DOMAIN-CONTAINING PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15716	ZSWIM2; E3 ubiquitin-protein ligase ZSWIM2	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.