Gene detail

Detailed information of ENSQPTP00000044335.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031557917.1, Bardet-Biedl syndrome 12 protein homolog [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

ENSQPTT00000053614

ATGAATGTAAAGGGGAGTTTTCAAGCAGCACAAGCTATTGCATCCTCCATCAAGACTCTGCTTGGACCTTCTCAAAGTACCAAGTGCTGTgttaatgatgaagatgatagcAATGCTATCATATGCAGCAATGCTGCCAAGATTCTTCAGTATCTGGTAGTTGAGCACCCTGTAGGGTACATCATCAATGATGCTTGCCAAGCAATGCACAAGACATATGGCTGTGGATGTAAAACATTAGTTTGTATGATAGGCTTTTGGAGTAGATCAGCATTAACACTACAACATGAGGGTGTTCCTTTATCTATCATATGTAAACTTTTTGATGAAGCACTATTTAACTGCTTTCAAGTGCTTGAAGAAATCACACTTCCAATACAAGAGATACTCTACGAAAGAAGTAAACATGGTGCTATGCCATCAAGCATATGGAAAACATCACAAGAAGATTCCAGTCCAACTGGCTCAAGACCATCTAGGTTAATAATTGAAAAAGTATGGTTAACTACTGAAGATGATATTAATGAAGTAGGCTTTGCACATAGACTGGATGGTGGTTTGCTAACAACAGATAAATCTCTTGCACTTTCTCTGAGCATGCATGAATATAAAAAGGAGATTCAAAACTTGGCTGCAAAGTTGCCTAAAAGCAACAAAACCCACAACAAGACAATATTAATGGCAGATTCTCAATGTTGCTCAGTCATCAAAGGAAATCCTTCTAGACAATCTTTAATATTTGATGATACCGTTGAGGATGAGTTTGACTCCTGTTTTGATGATTTACCTGTCAATGTTGGAGCGAGTTCTTTGGAAGGAATGGCATGcaacaacacaaaacaaaataccAATATATCAACTAATAAATCGGAACGGGAGAAAATGGATCAAATGCTAAAAGATCTTAGTTTTTCAGGACAAAAAGTAGGATCACCTAAGGTTTCCAATGGAAAAAACGTTTCAGAAATCTTAAAAAGCTGCTGTAACTTGTCTATCGATTCTCCTAAGACACAAAGAGTACAAGAATCTTATCAGGAACAAAAACATTCTTTTCGTCAAGGTAGCTTTAATTTGGGCTTCATAAGAAAAGGAAATCTTGAAAGACTTGGGAAAATGTTATCTCATGGAAAAGACAAAGTGATGGGTCTCGCAGTGGAAGTCATCTTTCATCAGATATCTTCCAGTAGGAAAAAGATGCATTTGAATAGATTTGATGTTGATGAAAATGCTATAAATATTGAGAGAATTATTGGACCAACAAGTACTCATTCAAGTTTAGTTAATGGAATCCTCTTGCATCAAAAAGCACAGCTAATTGGAGCATTTCCACTGAATGCTTTACGTGTGGCTTTGATTAATGGAGACATCACAGAGGAGTTTAGACATGTTGGCTTTAAAGACTTGTTTCAGACCAAGAGGATTTTCAATAAAGACtcttatgaaaactttagcACCAGCAACAACTCCTGGCTTCAGATGATTTTAAGTGTCTTGAGAACATTGAATATCGGCGTCATAATTGCAAGAGGGAATATTGATACAGACCTAGAGGACAGCTGTCAAGCATTGAACATACAAACATTTTCAGGAATTTCATCAAAAATACTTCAGCTTTTGTCACAATCACTTGGTTCAACTGTCGTAGTTTATCTTACAGACTTGAAAGAGTCTCATATTGGTAGACCTGTTATCCTTCATCATTGGGGTGGACCACAGCCTGGGATGACCAATGataatagatattttgtagttttaaGTCTGTATGAAAACCAAAAAGCTGAAGCCACCTTGCAGCATGGTAGAAATAATGTTggattaaaagaaaatatgaaagaacCCATAGATGATAGAGAGATTTTGCAAACTGTGTTGTTATGTGGTCCATCTGAGCAACTTGTAATGGATTTAGAATTATCATTCTGGAATTGTGTTTTCCGTCTTCGAAACACCATCAACTGTGGGTCTATTTTACCAGGAGCTGGAATTACTGAGATGACATGTATTCAGAAACTCAGAAAAATATCAGAGAATCCTGACCACCTTGAAGATAAACACAGTAAACCCTCAAGTTGGTTGCAAGTGAGTCTATCATCCTATCGCCCAGTGGTATATGCAACATTTGCAGATGGACTCGAAGAATTTCTTGTCAATCTTTTATCTAACAGTGGGTGCATGATGAACTATGGTCAAGCCCATACTGCTGTCCAGGAAGCACTAGATGACCATGACCAACAATCATCAGGGTACCAGTATCCTCTGGTAGCTGATGACTTGATTGCAAAAAGGAATGCATGGTCTAAAGCTGTAGGTGTTGTATGTCTGATGCTACAGTCAGACATGGGAATTGTAACTGGAAGTCAGGCTAGTACTAACTAA

Transcript

ENSQPTT00000053614

TCCAACATGGTGGATCAAAAGTTGGACTGCAAtggtttttctttaaaaaatacacataACGAATGCCATGAATGTAAAGGGGAGTTTTCAAGCAGCACAAGCTATTGCATCCTCCATCAAGACTCTGCTTGGACCTTCTCAAAGTACCAAGTGCTGTgttaatgatgaagatgatagcAATGCTATCATATGCAGCAATGCTGCCAAGATTCTTCAGTATCTGGTAGTTGAGCACCCTGTAGGGTACATCATCAATGATGCTTGCCAAGCAATGCACAAGACATATGGCTGTGGATGTAAAACATTAGTTTGTATGATAGGCTTTTGGAGTAGATCAGCATTAACACTACAACATGAGGGTGTTCCTTTATCTATCATATGTAAACTTTTTGATGAAGCACTATTTAACTGCTTTCAAGTGCTTGAAGAAATCACACTTCCAATACAAGAGATACTCTACGAAAGAAGTAAACATGGTGCTATGCCATCAAGCATATGGAAAACATCACAAGAAGATTCCAGTCCAACTGGCTCAAGACCATCTAGGTTAATAATTGAAAAAGTATGGTTAACTACTGAAGATGATATTAATGAAGTAGGCTTTGCACATAGACTGGATGGTGGTTTGCTAACAACAGATAAATCTCTTGCACTTTCTCTGAGCATGCATGAATATAAAAAGGAGATTCAAAACTTGGCTGCAAAGTTGCCTAAAAGCAACAAAACCCACAACAAGACAATATTAATGGCAGATTCTCAATGTTGCTCAGTCATCAAAGGAAATCCTTCTAGACAATCTTTAATATTTGATGATACCGTTGAGGATGAGTTTGACTCCTGTTTTGATGATTTACCTGTCAATGTTGGAGCGAGTTCTTTGGAAGGAATGGCATGcaacaacacaaaacaaaataccAATATATCAACTAATAAATCGGAACGGGAGAAAATGGATCAAATGCTAAAAGATCTTAGTTTTTCAGGACAAAAAGTAGGATCACCTAAGGTTTCCAATGGAAAAAACGTTTCAGAAATCTTAAAAAGCTGCTGTAACTTGTCTATCGATTCTCCTAAGACACAAAGAGTACAAGAATCTTATCAGGAACAAAAACATTCTTTTCGTCAAGGTAGCTTTAATTTGGGCTTCATAAGAAAAGGAAATCTTGAAAGACTTGGGAAAATGTTATCTCATGGAAAAGACAAAGTGATGGGTCTCGCAGTGGAAGTCATCTTTCATCAGATATCTTCCAGTAGGAAAAAGATGCATTTGAATAGATTTGATGTTGATGAAAATGCTATAAATATTGAGAGAATTATTGGACCAACAAGTACTCATTCAAGTTTAGTTAATGGAATCCTCTTGCATCAAAAAGCACAGCTAATTGGAGCATTTCCACTGAATGCTTTACGTGTGGCTTTGATTAATGGAGACATCACAGAGGAGTTTAGACATGTTGGCTTTAAAGACTTGTTTCAGACCAAGAGGATTTTCAATAAAGACtcttatgaaaactttagcACCAGCAACAACTCCTGGCTTCAGATGATTTTAAGTGTCTTGAGAACATTGAATATCGGCGTCATAATTGCAAGAGGGAATATTGATACAGACCTAGAGGACAGCTGTCAAGCATTGAACATACAAACATTTTCAGGAATTTCATCAAAAATACTTCAGCTTTTGTCACAATCACTTGGTTCAACTGTCGTAGTTTATCTTACAGACTTGAAAGAGTCTCATATTGGTAGACCTGTTATCCTTCATCATTGGGGTGGACCACAGCCTGGGATGACCAATGataatagatattttgtagttttaaGTCTGTATGAAAACCAAAAAGCTGAAGCCACCTTGCAGCATGGTAGAAATAATGTTggattaaaagaaaatatgaaagaacCCATAGATGATAGAGAGATTTTGCAAACTGTGTTGTTATGTGGTCCATCTGAGCAACTTGTAATGGATTTAGAATTATCATTCTGGAATTGTGTTTTCCGTCTTCGAAACACCATCAACTGTGGGTCTATTTTACCAGGAGCTGGAATTACTGAGATGACATGTATTCAGAAACTCAGAAAAATATCAGAGAATCCTGACCACCTTGAAGATAAACACAGTAAACCCTCAAGTTGGTTGCAAGTGAGTCTATCATCCTATCGCCCAGTGGTATATGCAACATTTGCAGATGGACTCGAAGAATTTCTTGTCAATCTTTTATCTAACAGTGGGTGCATGATGAACTATGGTCAAGCCCATACTGCTGTCCAGGAAGCACTAGATGACCATGACCAACAATCATCAGGGTACCAGTATCCTCTGGTAGCTGATGACTTGATTGCAAAAAGGAATGCATGGTCTAAAGCTGTAGGTGTTGTATGTCTGATGCTACAGTCAGACATGGGAATTGTAACTGGAAGTCAGGCTAGTACTAACTAATCTACAGCATTGACTCATCTGTATGTTAGACATATGTTATTTACCAGCTTGTTATTTACCAAGTTGGTCTGAAAAGGGAAAAACTGctcgaggtcttgaatatatgGAACAAGGCCATAAgtcaaaaaaaagttttaggTTTTATTCCATGTTTTATAACTTGAATTTGGAAAGCAACTTTGTCATTTCATATTTCACCAAGATGTGATTAAACCTGTGATAGTGCTATGCTTTCATGGATGCTTGGTATCCATCATTATTCATTCATGTACATTGTACAAATGTATCTTACAGTGAAACCCTTTTATGAGGTTTTATTCAATTGGTGGACAAGTACTcacttatgaaataaataaataataatttattaaacaaaatcAGTTGTGTTGTAATTATTTTCATACACTCTTCAGGGTAGAACATTTTGATGGGTGTGCCGAGGGTGTGCCTAAATCCAGATGACCATACATTATCAACCTCATACAAATGTGCAATCAGCTCCAACATACTGATAACCTGTAGCAATAGTCTCAATAACCTGGCTGCCAGAAGTCATGTTCCAAAGTCTGAGTTGTTACTATTGAATGCCGAGTGTGTTGTGTCATTAGGGCATATTTGAAGGTATCAACAGTTGTTCCATCCATCAACTTGTTGACTTATTCACcatgatgcattatttcaccTATTCCAAGTCACTTTTAGCCCAATGTCTTACATCTGTAGGGCACTCTGGGTATTTATCAACAGCCTCCATCACCTGTCTAGTGTTCAGCAGTAAGACCATCAGGCGATATTCCTTTTGTACATTCTTTGATGAACCTTCTATGGGTTTGACTAACTCCAAAGCTAACAAATGCTCAAAGG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5SUD9	Chaperonin-containing T-complex member BBS12 OS=Mus musculus OX=10090 GN=Bbs12 PE=3 SV=2
Q6ZW61	Chaperonin-containing T-complex member BBS12 OS=Homo sapiens OX=9606 GN=BBS12 PE=1 SV=2
Q5RC62	Chaperonin-containing T-complex member BBS12 OS=Pongo abelii OX=9601 GN=BBS12 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007301 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00118 all species →	Cpn60_TCP1	TCP-1/cpn60 chaperonin family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027410 all species →	Homologous_superfamily	TCP-1-like chaperonin intermediate domain superfamily	Interproscan
IPR042984 all species →	Family	Bardet-Biedl syndrome 12 protein	Interproscan
IPR027409 all species →	Homologous_superfamily	GroEL-like apical domain superfamily	Interproscan
IPR002423 all species →	Family	Chaperonin Cpn60/GroEL/TCP-1 family	Interproscan
IPR027413 all species →	Homologous_superfamily	GroEL-like equatorial domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46883 all species →	BARDET-BIEDL SYNDROME 12 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0045494 all species →	Biological Process	photoreceptor cell maintenance	Interproscan
GO:0051131 all species →	Biological Process	chaperone-mediated protein complex assembly	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19402	BBS12; Bardet-Biedl syndrome 12 protein	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.