Gene detail

Detailed information of ENSQPTP00000045216.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031574001.1, dermatan-sulfate epimerase-like protein [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

ENSQPTT00000054494

ATGAGAAATACACCACGCTCAATCTTCACCATGAAACCCGAGGTCTTAGcaagaatatattttttaattttattaagtTTTCTTACAGCTGGATCTGCCTCCTGTAAACATCCAATTTTGTATTACTCCAGCGAAGAAGTTGAAGAACTCCAACAAAAAGCGAGAACTTCACATCGGCATATATTCTCTCGCCTCCGCGAAGCAGCAGAGGAAATGAAGGGAAActcacaaacttacactccgCCTTCTAACTGGACTGACTTCTCTCGCTCGTGGAACGAAATTTATGGGAATAGTTTAATCTCACTCGCGTTTTACTGTGTGTTGAACCCCACCGATTACGAGGCGTTCGGGCTCGCGAGAAACATCATAAAGAGATTTACCGTGTTGAGAAACTGGAGATGTTCGCTTAACATAGATGATGACGTTCCTGTAGCACACAGCTTGGTTGCCGTAGCAACAGCTTATGATTTCCTTTGGAATCGACTGGATGATAATGAACGTCATTTGATTgttgataaaataaaacatgaaTCGCGCGTTATTTACCAAAGATCCTTCGAGAAATGGTGGGGAAAGATTTACATTCAAAATCACATGGCGACAAATTATATGGCCCTTATGACCGCTGCTTTAGTTTTGAAGAGCAAGAATGATCATGAAACGTTTTTGTGGGAGAAAAGAGCTCACCTAATGCTTAACAGAACAATGTTCCTTCTTAGCTTCGTAACGGATGGAACACTCgacgaaggagtttcttacgGGAGCTATACATCTCGCTCTCTGACCCAGTACATTGCACTCGCCAAAAGACATTTTGATATCGATTTTACGAAGAGCGAATGGCTGAAGAAGCATTTCTGGTTTCTATATCGGACAATTCTGCCCAGTTTTGATGAAGCTCTAGGCATTGCAGACTCGAATGGTAAGTGGTTTTACGGACCAGAGAGTCAGTTGGTATTCTTGGACAAGATGGTGTTGAAAAACGGATTCGGTAATTGGTTGGCAATGGCCATACAACGCATGCGCAAAGATGGAAAAACGCTGTCCCTTGCACGTGCGCATTGTTTTGCCACCTTATACACCGAGTTTTTGTTTTACGACGAGAAAATAGGTGAGAGACCACCACCAGTGTCTAATGTTTCTACTCTTCACATCTTTAAAGATTGGGGTGTTGTCGTCTTTGGGCGTGGTGCGGAAACACCACGTGCAGTTTCCAGACAAAAGTTATCAACTTTTGTGTCATTTAAATGCGGAGTACTCCACGGAGAAGCTATAAACAACATCGTCAACACTAAACCTTGGCCTTGGATTAAAGGATGGAGGCAATTCAACCCAGGGCATGAACATCCAGATCATGGCTCTTTCACTTTCTACCCAAACGGCATCCCGTTTATTACTGAAGCCCTGTATGGTCCAAAGTACACATGGTTGAACAACGCGCTGTTATTTGGCTGTAGTTCTTCACTGAACAATGCTTGCTTTACAGGTCAACTCTCTGAGAACAAAGCGTGGCTCAGGTTTGAGAGTGATACATTTTGGAAAGCTAAGGGAACGATTCTCGCTGCAATTGCTCAACACGAAAACGTTTACATCACTGGAGAATACTCGGGATGGTATAACAAAGAACTTggcttaaaaaaagtttatcgGACGCTTTTACTTGTACGCTCAGATCTTCTCATCGTTTGTGATTCAATCTTCAAGAAAAACGACAGCTCGTTAGATAAAATGTCAGCTTTCTTCCACAACAGATTTTCGCCTTTTTCCatcagagaaagaaaaaacggCGAGACGTTTGCTGAAGTAATACAGGGAGGACAAGCTCAAACGGTTTATTGGGCAAGTTCTGCTGGAAAAACCATCGATGTACGTAGTCAACACGCACAGTTCAAAGCAGAGGCCGGGAAAAGGAAAACCAATTTTGTGAACATAACCACACCCATGCTAGGTCATTCAACATATGTGGTTTATACCTTTGCTGGAAATAATTTAAAAGTAAGGCACTTAAGATTATTCGATATTAACGGTAccgtaatgataaaaatggaCCTCGAAGACTCGACTTTGATCCGAATCACCATACCATCAAGACCAGAAAAGTACAATACTTTACTGGCAACACGATTTGACGATTACGTTGATATTGAAGTTGAATACGAAGTTGAAATATCGGATCGCAGTGTGATTTACTTGGTTGGAAAACTCGTTTTTATGGGCCTATTATTCCTTATGTTATGTTTCTGGTATTCCTTTAGACTAAAAGGCAAGAGAATGATGAGAAAAATTCTCTTAAAAATACTCCATAAAATAGAGGGATTTTTTGTGGCACAGATATTGAATTGA

Transcript

ENSQPTT00000054494

CGGAAGCTAGACGTTTACTTTAATGGAAAATTCATTAATATGGTACATGATATACATAGGTTTCTGGAGGCGAAATGCACGATGTGGCAAAATTATCAACAAAGATAATATCAAATCCACTACTGGTCATTTTTTCAACATAGGAGTTTTGTTAGGCCGACCTGGTGACCTGAATAATATCCTTTTGATTGAAGTTCCATGCTAGAGGAAGTTGTTTCCACCATTTTGTATGAGAAATACACCACGCTCAATCTTCACCATGAAACCCGAGGTCTTAGcaagaatatattttttaattttattaagtTTTCTTACAGCTGGATCTGCCTCCTGTAAACATCCAATTTTGTATTACTCCAGCGAAGAAGTTGAAGAACTCCAACAAAAAGCGAGAACTTCACATCGGCATATATTCTCTCGCCTCCGCGAAGCAGCAGAGGAAATGAAGGGAAActcacaaacttacactccgCCTTCTAACTGGACTGACTTCTCTCGCTCGTGGAACGAAATTTATGGGAATAGTTTAATCTCACTCGCGTTTTACTGTGTGTTGAACCCCACCGATTACGAGGCGTTCGGGCTCGCGAGAAACATCATAAAGAGATTTACCGTGTTGAGAAACTGGAGATGTTCGCTTAACATAGATGATGACGTTCCTGTAGCACACAGCTTGGTTGCCGTAGCAACAGCTTATGATTTCCTTTGGAATCGACTGGATGATAATGAACGTCATTTGATTgttgataaaataaaacatgaaTCGCGCGTTATTTACCAAAGATCCTTCGAGAAATGGTGGGGAAAGATTTACATTCAAAATCACATGGCGACAAATTATATGGCCCTTATGACCGCTGCTTTAGTTTTGAAGAGCAAGAATGATCATGAAACGTTTTTGTGGGAGAAAAGAGCTCACCTAATGCTTAACAGAACAATGTTCCTTCTTAGCTTCGTAACGGATGGAACACTCgacgaaggagtttcttacgGGAGCTATACATCTCGCTCTCTGACCCAGTACATTGCACTCGCCAAAAGACATTTTGATATCGATTTTACGAAGAGCGAATGGCTGAAGAAGCATTTCTGGTTTCTATATCGGACAATTCTGCCCAGTTTTGATGAAGCTCTAGGCATTGCAGACTCGAATGGTAAGTGGTTTTACGGACCAGAGAGTCAGTTGGTATTCTTGGACAAGATGGTGTTGAAAAACGGATTCGGTAATTGGTTGGCAATGGCCATACAACGCATGCGCAAAGATGGAAAAACGCTGTCCCTTGCACGTGCGCATTGTTTTGCCACCTTATACACCGAGTTTTTGTTTTACGACGAGAAAATAGGTGAGAGACCACCACCAGTGTCTAATGTTTCTACTCTTCACATCTTTAAAGATTGGGGTGTTGTCGTCTTTGGGCGTGGTGCGGAAACACCACGTGCAGTTTCCAGACAAAAGTTATCAACTTTTGTGTCATTTAAATGCGGAGTACTCCACGGAGAAGCTATAAACAACATCGTCAACACTAAACCTTGGCCTTGGATTAAAGGATGGAGGCAATTCAACCCAGGGCATGAACATCCAGATCATGGCTCTTTCACTTTCTACCCAAACGGCATCCCGTTTATTACTGAAGCCCTGTATGGTCCAAAGTACACATGGTTGAACAACGCGCTGTTATTTGGCTGTAGTTCTTCACTGAACAATGCTTGCTTTACAGGTCAACTCTCTGAGAACAAAGCGTGGCTCAGGTTTGAGAGTGATACATTTTGGAAAGCTAAGGGAACGATTCTCGCTGCAATTGCTCAACACGAAAACGTTTACATCACTGGAGAATACTCGGGATGGTATAACAAAGAACTTggcttaaaaaaagtttatcgGACGCTTTTACTTGTACGCTCAGATCTTCTCATCGTTTGTGATTCAATCTTCAAGAAAAACGACAGCTCGTTAGATAAAATGTCAGCTTTCTTCCACAACAGATTTTCGCCTTTTTCCatcagagaaagaaaaaacggCGAGACGTTTGCTGAAGTAATACAGGGAGGACAAGCTCAAACGGTTTATTGGGCAAGTTCTGCTGGAAAAACCATCGATGTACGTAGTCAACACGCACAGTTCAAAGCAGAGGCCGGGAAAAGGAAAACCAATTTTGTGAACATAACCACACCCATGCTAGGTCATTCAACATATGTGGTTTATACCTTTGCTGGAAATAATTTAAAAGTAAGGCACTTAAGATTATTCGATATTAACGGTAccgtaatgataaaaatggaCCTCGAAGACTCGACTTTGATCCGAATCACCATACCATCAAGACCAGAAAAGTACAATACTTTACTGGCAACACGATTTGACGATTACGTTGATATTGAAGTTGAATACGAAGTTGAAATATCGGATCGCAGTGTGATTTACTTGGTTGGAAAACTCGTTTTTATGGGCCTATTATTCCTTATGTTATGTTTCTGGTATTCCTTTAGACTAAAAGGCAAGAGAATGATGAGAAAAATTCTCTTAAAAATACTCCATAAAATAGAGGGATTTTTTGTGGCACAGATATTGAATTGACTACTTTTTTTCCATGTACGAACAGGTTTCATTGCCTTATCAGTTATTCTTGTTTACCAGTAATGCTTCAGAAAATGATTGTCAAGAATATTATGtccaaattaaagaaataatactcaaggtaATGACGCGTgctctgaaataaaaaacattacgcctaTATTAAATCAATAATAACACGCTGTCTGAGATGGGTAAGAATGTGCccaaagcaaagaaataatacgcAAGAGAATGAAGCGTgctctgaaataaaaaacattacgcccaaattAAATCTATAACACCCTGTCTGAGATGGGTAAGAATGTGCccaaagcaaagaaataatacgcAAGAGAATGACGCGTGCTCTGAAATAAAGAAACCTTAGGC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8IZU8	Dermatan-sulfate epimerase-like protein OS=Homo sapiens OX=9606 GN=DSEL PE=1 SV=2
P0C2H4	Dermatan-sulfate epimerase OS=Bos taurus OX=9913 GN=DSE PE=1 SV=1
Q9UL01	Dermatan-sulfate epimerase OS=Homo sapiens OX=9606 GN=DSE PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002542 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16332 all species →	DUF4962	Domain of unknown function (DUF4962)	Repeat	Interproscan
PF07940 all species →	Hepar_II_III	Heparinase II/III-like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032518 all species →	Domain	Heparinase II, N-terminal	Interproscan
IPR052447 all species →	Family	Dermatan-Sulfate Isomerase	Interproscan
IPR012480 all species →	Family	Heparinase II/III-like	Interproscan
IPR008929 all species →	Homologous_superfamily	Chondroitin AC/alginate lyase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15532 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030204 all species →	Biological Process	chondroitin sulfate metabolic process	Interproscan
GO:0030205 all species →	Biological Process	dermatan sulfate metabolic process	Interproscan
GO:0047757 all species →	Molecular Function	chondroitin-glucuronate 5-epimerase activity	Interproscan
GO:0016829 all species →	Molecular Function	lyase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01794	DSE; chondroitin-glucuronate 5-epimerase	EC:5.1.3.19	Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate	ko00532	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.