Gene detail

Detailed information of ENSQPTP00000046941.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031555797.1, retinoic acid receptor RXR-gamma-A-like [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

Transcript

ENSQPTT00000056391

attttgatAAAGAGTTAGAGGACCAATCATAGTTGGCGTTCTTAGGATGTTGTGAATGGTTGCACGAGGCCATCACGCATGCTTGCGTAGGAGAGAGAAGTACAGCTATGAACGAAACTTTACCGTTTTTGTTGTCAAATTTAGGTTTTTTCTgtcattttttcttccttgATCCTAAGTTTGATAGAAGTTTTAGACAGTGTTATGTTTTTTGATGTGGTAATGATTGGTTTGAGTTGGTTGTATCGTGCAGAATGGACGAAAGGACAACTGAAAACAGCACCAATCTACAACGACATGaaCCAGGAGGAACAGAAACCAATTCTTCAGAGCCAAAGGCTTATCAACATCCAATCGCTATAGTGTCCTCAGTTAGGGAATCTTTTCTTCTTCGACCAACAATGATACCTCTTCGTTCGGCACCAAGTATGGCTGCATCTCCATGCTTGACAGGAGCAAGCTTGTTTTATTCAACTCAGTATATCCCAACTCAACAGTTTGCAATGAACCAGCCACAAGCACCATTTCCGGCAGTTATGCCTCCTTTGCTTCATGTACAAACCAACAATCTCTCTACGGTAAGACCAAATAATGTACACATGCCAGAAAGAGAGGTTCGTAAAAAACGCAAATCCATGCAGGAGTCTGAACCAATGGATACAGGCTCAGCTGTTAGTAGTGCTAGTGATCAACGGAGCTCTGTTGGGAGCCTTGAAGATCAAAACTTGAAAACGGAGGAGACTTCTCCCCTTCAGTTATCACTGACGACTGATGAGAGTCCTCCTAGTACACCCTATTCATCTGCATCTTCACCTACAGCAATTGGTACCATGTCTCCAACATCTCCTCCGCTGTTGCACTCTCCAACCACAAATGAAATGTGTGCAATATGTGGAGATAGAGCTACTGGTCATCACTATGGGGTGCCAAGCTGTGAAGGCTGTAAAGGATTTTTTAAACGAAGTGTACAAAATAAAAAGGCTTATACTTGTCGTAATTTGACAAAGGATTGCCCTATGGACAAACGGCACCGTAATAGGTGTCAATACTGCagatttcaaaaatgtttaaagGTTGGGATGATTAAAGAAGCTGTAAGAGAAGATAGGGCACCAGGAGGAAGACACAAGAACTCACTAACACAACCAAAAACTAAAGACGACCAACAACCACCATGCAAGCAGCCAAGGAAAAGCTTATCAATGATGTCGCCTTGTAAAAACCCTGAGCCACCTGCACCTTTACCAGATCTTATTGACAAAATTATCACTTTTGATTCCATTAACACTGGAAATATGGAAGACTGTTTGGGCTGCAAGGAAACTGAACTGAAGGAAAAGACTTTGGCACATGTCACACAACTGGCTGAACAACAGTTGGTTAGGAGTTTGTCTTGGTTTGAAAATCTGCCACTTTTGAAGGATATAAGTAAATCAGACAAGGATACTTTAATCAAAAATTGTTGGGTAGAGCTTATGCTTGCTAATTTGATCAAACAGTCACAGAATTTAGAGGATAAAGCTATGCtctgtaaaaaacaaatattggATTATGAGACTGCTGAGACAACAGGTATTGGAGATATCATGCAAAGAGTTGTACAAATGGCAAGTAAATTTAGGGAATTTCAACTGGATCAGGTGGAGTTTGTTTGCATGAAGATTATTGTCCTGTTAAATCCAGATGTAGTTGGTCTTGAAAATCAGCAGCTAATTGAACAGTTACAGGATAAATTCCACACAGCTCTACAAAACTACATCAAAACTACGTTCCCAAAGGAAACCAATCGATTTGGTAACATATTGCTCAGATTACCAGAATTACGTTCCATTGGAACCAAGAGTATAGAACGTCTGTTTATGCTAAACCTCACAGGACAGATCCACCCTAGTGATTCCCTTTCTGATCTACTTCATTCCGCCAAGCGTTAGTAAACAATACTTACACTGTACACATTCTGTAAGGGAAAATGCTGATAGACTCCTGAAGCACTTAACAGGAAAAATTTCATGGCTGTTTCAAGGGCATGCTTGAAGTCTTTGGTCTTGTACATAATGCTCTGGTACTGAAGATAAGAGGTAGAATAAGGATAGTAATGGTTGTATGTAAGCAGTCTGTTATAGCAGACATATGAGAGCAGGTTTTgtgtgtctgtggagaaaaaTGTAGCCTGTTCTGTTTCTGGATATTGTCTGGATTCTTGTGTTTTGGTTCCTGTTGATCAAAAAATTACTCTCACACCATTTTATAGACCATGCTTCATATCTTAAGCTTCAGACTCAATTGTGAGGCTTTGCTCGTATGGTATTTCATGTTTGATACAAACATATGGATCATGAAATACATTAATTTATTGATGGGAATGAAATAATGTACTTTTTATAATGTTCCTGCCCTTCGGCAATTATTATAAAAGTTTGGCAGAAATGCTAGCGAATTCGCTACTCAATGACGTATTTGAATCTACAGCACTGTTTCTACTGCTGCTTTTGAGGTTTGGTgcaattttgaacattttattcTGGATAGCCTAGCTAtcgaatattaatattttgaacATGGCCTTTTATAAATGTGATGATGGTTTCGTATAAACAAAGATTGTcgtaaaacacaagaaaatgTCAGAAAAGCAAAGTGACAAAAATTACTAGTAATGTTGGTAACGTCACCAGGTGCAGTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q90416	Retinoic acid receptor RXR-gamma-A OS=Danio rerio OX=7955 GN=rxrga PE=2 SV=2
Q90415	Retinoic acid receptor RXR-alpha-B OS=Danio rerio OX=7955 GN=rxrab PE=2 SV=1
P28700	Retinoic acid receptor RXR-alpha OS=Mus musculus OX=10090 GN=Rxra PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009417 (this species only)
Transcription factor family	ESR-like · all TF in this species
Transcription factor family	Miscellaneous · all TF in this species
Transcription factor family	NGFIB-like · all TF in this species
Transcription factor family	RXR-like · all TF in this species
Transcription factor family	SF-like · all TF in this species
Transcription factor family	THR-like · all TF in this species
Transcription factor family	GCNF-like · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00105 all species →	zf-C4	Zinc finger, C4 type (two domains)	Domain	Interproscan
PF00104 all species →	Hormone_recep	Ligand-binding domain of nuclear hormone receptor	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001628 all species →	Domain	Zinc finger, nuclear hormone receptor-type	Interproscan
IPR035500 all species →	Homologous_superfamily	Nuclear hormone receptor-like domain superfamily	Interproscan
IPR001723 all species →	Family	Nuclear hormone receptor	Interproscan
IPR003078 all species →	Family	Retinoic acid receptor	Interproscan
IPR013088 all species →	Homologous_superfamily	Zinc finger, NHR/GATA-type	Interproscan
IPR000536 all species →	Domain	Nuclear hormone receptor, ligand-binding domain	Interproscan
IPR050200 all species →	Family	Nuclear hormone receptor family NR3 subfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48092 all species →	KNIRPS-RELATED PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0004879 all species →	Molecular Function	nuclear receptor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0048384 all species →	Biological Process	retinoic acid receptor signaling pathway	Interproscan
GO:0000790 all species →	Cellular Component	chromatin	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08705	NR5A3, ftz-f1; nuclear receptor subfamily 5 group A member 3	-	Nuclear receptors	ko03310	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.