Gene detail

Detailed information of ENSQPTP00000047412.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031556170.1, lysine-specific demethylase 4C-like [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

Transcript

ENSQPTT00000056939

CACAATCCTTGACCTCATTGAAGACAAATATGGTGTCAAAGTTGAGGGGGTCAACACACCATACCTGTACTTTGGTATGTGGAAGGCAACCTTTGCTTGGCATACAGAAGATATGGACTTGTACAGTATTAACTATGTACACTTTGGAGCTCCCAAGACTTGgttTTTTCCCCGGAAGTCGGCAAAGTTGTTCTAATTTCCTTCGCCACAAGATGACTATAATTTCACCTCAAGTTCTCAAGAAATTCTCCATTCCTTTTGATAAGtgcCAATGCAAAAAAGATTCAGTAAAAATTTGCATGGACGCATTTGTAGAGAAGTACCAGCCTGATCTATGGGAGGACTACCTTGCggcaaagaagaaggaagaggGTAGCGACAGCGAGAGTGAAAGCTCGAGTGAAGAGGAAGATAGTAAAGATGAAAGCGGTGAAGACGACGACGAAACAACCAGTAAAAGTCAAAAGAAACCTGTAGCTTCCCGTCGGCCAACTAAGCGAACTGCTAGAAAAAGTCAGGATGTGGTATCCCCACGTCATTCCAAGCGCCAGCCTCCAGTGACCAAGTCTGTTACTCTACCGAGCTCACAGAGCAAGCTAGAAGAACTAAACAAAGACCCAGTTCAGCCATCGTCGAGCAAGAAGCGATCCATTACTGTACCTCACGTTGTTGAAGGCCTAGAAAGACTATGGAACCACCAGTCACCTTGCTTTAAAACAGAACAAGCTTTTAATATGATCATGGCTGAGTTAGAACCTTACTGTGCACTCTGTCAGTTATTCGCCAAATTGAAGGAGGATATTTTAACTCACATTAAAGAAGAACTACCAAAAAGAATCAAATCATCACCAGAAAACTCGCCAAAATCCGAATCCCCGACCACCCGTAGTTGGCTGAAGCCTTCCAAACCTATCCTACCGGAGATTTGTTTCATGTCGGAGGGTTCAAGCCCGGAGAGTATGGGATCGTGGATTGATCACCGGATTTCTAACGATACTGAAAGTCCTTTACTGCGCTGTGAGACATGTAGAGTTGTCGTCCATGAAAGTTGCTATGGAACCGATAATCTGACCTCAGAAAAACCATGGAAGTGTGATAGATGTCGTCAAGACGACGAAGATGATATCAGATCTGCGCATTGCTGTTTATGCTGTGTTCGTGGAGGAGCCTTGAAGAAAACAACAGACAACAGATGGGCTCATATTGGCTGTGCGCTGACCATTCCTGAAGTAGTATTTCAGGACATCGGTAATCGAAATGACATCAATACAGACAAGGTACCTCAAGGCAGGAAAAAACTGaaaTGTTCGATATGTCGTTCAGTAAGCTCAGATCTTCAAAGCGCATGCGTACAATGCTGTGCGGGTAAGTGCGCCACAGCATACCACGTGACGTGCTatgttttggcgggaaataaGCTCGAGCCTAGCGATTGGCCTCAACCTGTTGAAACATACTGCGAAAGACATAGTAGGAATAAATTTAAGTCAAAAGAACGAGATTTCTCTGAAATCAGTTGTGGAGAATCTGTCATAGCAAAACATAAAAATGGAAGATATTACAAGGGGAAAGTCATTAGCATGACATCAGAGGATTTCTACATGGTGTCGTTCGCTGATGGTTCTATTTGTGATACAGTTACCCCGAAAGATATCGAGGGATACGAGGACAGACAAGATGACATTCCCGAGGGCACCGTAATATCCATCAAATGGGAAGACGATACATTATGGAAGGCTAAAATAAATGGTAGACGAATAATTGTGACCTATCAGATAAAGTTCGAAGATGAATCTTTCTTGGGAGTGCGGCGAGAAGATGTGTATAAAGAAGGCGTAGAACTACCCGCTAAAGTGAGCCAGAGAATGTCCAACGCAACTGAAACAGCAAACCTATCGAGTTGGGATGACATGCCTAAGGAAGCGAAGCGAAGACGGAAGACAAACCCTCGTTATACGTCGTCCACATTCACCTAACTTACTTGAATCTGGTCGTGCATGGAAATGGGAAGCACCTCTTCTTGCATCTTCCTAAATCAGGCCCGATTCTTTTTGCGTCTTTTTCATTACAGATGCGCACTTCCAGGATTCATCTTGCATGGGTCGTTTATTGTTGGAAAACTGAGTTTTTACGTTATTGAGTGTTGCGCACCGGTTCTTAAAGGGAATAACGCATGTTGGTATTTCATTCCTGGTCGTCTTGCCTTTGCTACTGAATCAAAATAGTAGAAAAGATACCCCATCTGGAGCTATCTGGGTCGCGGAAATACAGAATATGGAGTGAAGCCACATTGCGTCGTAGATAGCGAGGTTCATTCGtactttctgattggctcagaTCGAAAGCCCACTCTCGACGCTTGAGTTCTGTCTGtcattcttactgcgcatgctcgacaaAATGGCACTTcgatgagcatgcgcagtaagcaGACAGGGGTCTGGGTCGTGATTGATCGGTAGCCCTTCACAGCCGTACCACAGGGCTCCTACTCGAGCAACGTAGatctttgttttcctattcCACGTCGCAAACCATGATTATTATTTAACCTTTtgctatatttatttatagcgAGTCTAGTTTTAGAACTtcattttgatatatttttctacgtattctttaattttctaaAGAGTATCAGTTAGTCTTGACTTATAAAGTCATCTTAACGTTACcacagaccccttgcactaaTTCCCACTCTGGGGGTTAAAACAAAAGTACTCCCTTTTCTTGaaaataggacgtttgcatgatggcgtcatttgactcccactaccataatgcttcgcgaattttctttcatattcaaatttgtatttccctatgagaatagtaagacaattggtgctaattaactgaataaaagaaagtgtgcaagggagtctggtagtagaggtcagtgacgccatcatgcaaacgtcctattgaatttttgttttaatgtttttgattgttttgacCACCAAGTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8VCD7	Lysine-specific demethylase 4C OS=Mus musculus OX=10090 GN=Kdm4c PE=1 SV=1
Q9H3R0	Lysine-specific demethylase 4C OS=Homo sapiens OX=9606 GN=KDM4C PE=1 SV=2
B2RRD7	Peregrin OS=Mus musculus OX=10090 GN=Brpf1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006820 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13831 all species →	PHD_2	PHD-finger	Family	Interproscan
PF13832 all species →	zf-HC5HC2H_2	PHD-zinc-finger like domain	Domain	Interproscan
PF18104 all species →	Tudor_2	Jumonji domain-containing protein 2A Tudor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050701 all species →	Family	Histone Modification Regulator	Interproscan
IPR001965 all species →	Domain	Zinc finger, PHD-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR002999 all species →	Domain	Tudor domain	Interproscan
IPR034732 all species →	Domain	Extended PHD (ePHD) domain	Interproscan
IPR040477 all species →	Domain	Lysine-specific demethylase 4-like, Tudor domain	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13793 all species →	PHD FINGER PROTEINS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSQPTP00000047412.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.