Gene detail

Detailed information of ENSQPTP00000048265.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: RMX42113.1, hypothetical protein pdam_00001339 [Pocillopora damicornis]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

ENSQPTT00000057958

ATGGCGTGTAATAATACACAAAACTACAAATTGGTCGACACGGAAGCAAGCCTCAAGGAATCTTTGAGCGAATTAAGAAGCTGTGAATCAAACGCTTTCTTAGCTGTAGATTGTGAAGGCGTCAATTTGAGTAGGAAAGGAGAGCTGACAATTATTACCGTGGCAACCGAAGAGAAAGCCTACATATTTGATGTGACAGTTCTGAAGCAAGCGGTGTTTGACGAAGGCCTTCGTGAAATCCTGGAAGACAAGTCGAGAGAGAAGTTGATGTTTGATTGCAGAGAAGATGCAGATAGTCTTTGGCATCAGTTCCGAGTCAAACTGGCTGGAGTTTTGGATGTTCAACTACTTGAGATTATGTACAGACGACAACAGATCGAAAGATTCCGAAGTCGCAGCCAAAGGGTAGATGTTGTTGAGAGTATTTATGGTTTTCGTCGTTGCATTGAACTGTATGTTAACGATAGAAATGCTCTCAAGACAAAAGATCAAGTGAAAGTGCTGCTAAAACGGAACGACAAACTGTGGAAACGTAGGCCACTTCCAGACACCTTGCTTCGCTACTGTGCTGTTGATACTCTAGAGATGTTTAAACTGTACGAAAAGCTGAAAAGTGCCAAAGACAAAGAGCTTCCTCGACTGAGAATTGCCTCTGAGCGCTATGCTGATATGTTGCGCAGTAAAGCCGAAAGAAGGTTCGACGGTTTCGAAAAGAATGCATATCTTCCACTGGATATAATACCCGAGAAAGGAACACTTGATTTTCCTCATGCTACTACTCAGTGCACCAAATGCCAACGGCTTTTTCCAAACGAAGAATTTAGTAAAATACAGTTGCGAAATGGTGAACAGAAATGCAGAGTTTGCAAGGAGGTGAACAAgtttagaagaagaaaaaaaaaaaaaaacagtttaaGGACCCTCAAGGAATCTTTGAGCGAATTAAGAAGCTGTGAATCAAACGCTTTCTTAGCTGTAGATTGTGAAGGCGTCAATTTGAGTAGGAAAGGAGAGCTAACAATTATTACCGTGGCCACCGAAGAGAAAGCCTACATATTTGATGTGACAGTTCTGAAGCAAGCGGTGTTTGACGAAGGCCTTCGTGAAATCCTGGAAGACAAGTCGAGAGAGAAGTTGATGTTTGATTGCAGACAAGATGCGGACAGTCTTTGGCATCAGTTTCAAGTCAAGTTGACTGGAGTTTTGGATGTTCAACTACTTGAGATTATGTACAGAAGAGAGAGTTCTGCAACTGGAGCGCAgtcgaaagaaaacaaacgatTCGAACGTCGCAGTAAGAAAGAAGATGAAATTGAGAATATTCATGGTTTTCGTCGTTGCATTGAACTGTATATCAAAGATGAAAATGTTCTCAAAACAAAAGATCGAGGGAAAGAGCTGCTAAAATGGAACGACGAACTGTGGAAACGTAGGCCACTTTCAGACACCTTGCTTCGCTACTGTGCTGTTGATACTCTAGAGATGTTTAAACTGTACAAAAAGCTGAAAAGTGCCAACGGCGATGAGCTTTCTCGACTGAGAGTTGCCTCTGAGCGCTATGCTGATATGTATCGCAATAAAACCGAGAGAAGATTCGACGATTATGAAACGAATGCATATCTTCCACTGGATATAATACCCGAGAAAGGAACGCTTGATTTTCCTCATGCTACTACTCAATGCACCAAATGCGAAAGGCTTTTCCCTTTCGAAGAATTTAGTAAAACACAGTTGCGAAATGGTAACCAGAAATGCAGAGTTTGCAAGGCGATCAAATTCTGTGATGATATGTATGCAGAACGTTGTCGTAGGGAGGATGCTGAGACGGACGATGGAATAGAGTGGAAGGAAGAATCTAATTACATTTCacgaaataatgataatggccATTTcacattgaaaaataaaacgcGGTCAAATCACGTTTCACCAAATAACCTATTTTACCACCCTGATTACGCAGATGATGATTCATTTTACCTCTAA

Transcript

ENSQPTT00000057958

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002014 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01612 all species →	DNA_pol_A_exo1	3'-5' exonuclease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002562 all species →	Domain	3'-5' exonuclease domain	Interproscan
IPR052144 all species →	Family	piRNA biogenesis EXD1-related protein	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46628 all species →	PIRNA BIOGENESIS PROTEIN EXD1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0006139 all species →	Biological Process	nucleobase-containing compound metabolic process	Interproscan
GO:0008408 all species →	Molecular Function	3'-5' exonuclease activity	Interproscan
GO:0034587 all species →	Biological Process	piRNA processing	Interproscan
GO:1990923 all species →	Cellular Component	PET complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18740	EXD1, EGL; exonuclease 3'-5' domain-containing protein 1	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.