Gene detail

Detailed information of ENSQPTP00000048480.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031563127.1, DNA-directed RNA polymerase I subunit RPA43-like [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PHG8	DNA-directed RNA polymerase I subunit RPA43 OS=Danio rerio OX=7955 GN=polr1f PE=2 SV=2
Q3B726	DNA-directed RNA polymerase I subunit RPA43 OS=Homo sapiens OX=9606 GN=POLR1F PE=1 SV=1
Q78WZ7	DNA-directed RNA polymerase I subunit RPA43 OS=Mus musculus OX=10090 GN=Polr1f PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009693 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03876 all species →	SHS2_Rpb7-N	SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397	Domain	Interproscan
PF17875 all species →	RPA43_OB	RPA43 OB domain in RNA Pol I	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036898 all species →	Homologous_superfamily	RNA polymerase Rpb7-like, N-terminal domain superfamily	Interproscan
IPR005576 all species →	Domain	RNA polymerase Rpb7-like , N-terminal	Interproscan
IPR045113 all species →	Family	RNA polymerase subunit Rpb7-like	Interproscan
IPR041901 all species →	Domain	Rpa43, N-terminal ribonucleoprotein (RNP) domain	Interproscan
IPR041178 all species →	Domain	RPA43, OB domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12709 all species →	DNA-DIRECTED RNA POLYMERASE II, III	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0005736 all species →	Cellular Component	RNA polymerase I complex	Interproscan
GO:0006352 all species →	Biological Process	DNA-templated transcription initiation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03004	RPA43, POLR1F, TWISTNB; DNA-directed RNA polymerase I subunit RPA43	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.