Gene detail

Detailed information of ENSQPTP00000048987.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031573555.1, circadian locomoter output cycles protein kaput-like [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

ENSQPTT00000058806

ATGGACGGTCAAGAAGAAGAGATGGCGAGTGACAAGAAAAACGAAGACTCCCAGCTGACCGAAACTAAGAGAGTCAGTCGGAACATGAACGAAAAGAAACGGAGAGACCGCTTCAATCTCTTGATCAACGAGCTTGCTGCTGTTATTTCACCTGGAAACCGAAATGGTAAATTTGAGAAAGTCACTGTCTTGAAAGAAGCGATTGATTGTTTGAGAAGTCAAAAGACGTCCCAATCTAGTCATCCGAGCATCACTCAAAGCAACTGGCAAACTTCACTGGTTGGTGGTTCTGAACTAAGCCAGCTAATCGTAGAAGCCATGAACGGATTTGTTTTAAGCCTAGACTCTTCAGGAATCATAACTTTTGTATCTGATTCAATTCTATCAGCCGTTGGTCATCGGTCCACCGAAATGATTGATAATTCTATTGCTGAATTTTTGGACCAAAGCGACCGGTCTTCTATATTTGTTCATTTAAGTTTGCTTCAACGCGAAGGTGAAGCCTTCCCACCTCCAGCATTGAATTTTACATCTAAATCGAAAGCATTCGGCAAAGCACTTGCCTTCCAAATGCACTTGCTGTACGGTCCACACATCGATAAGAAAGGTTATGTTACAGTGAACTGCCGTTGCCAAGCTTTTGCTATGTCACACACCACCAGCTTTCAACCTGTCACGCTACCCCATGGAAGCTCTCAAAACGCCAAACTCCAGCTTGTTATAGTTGGTACGTTACGACTTCCCAAGCCAAATATGATGGTGCCATTAGCAGATATCAAAGCTAAAGAATTCACATCTAAGTTGACATTAGGTTGGAAATATACCCAGGTAGACCCCAAAGCCTTACTTATAGTTGGGTATTTGCCAACAGAATTGATTGACAAGTCTgcatatttattcattcatgaaGAAGACATATCCAACATAACATCATATCATGAAATGTTGGTTCGCAAGGGTAGGGTTACTACATGCTACTATCGATTCCTGACGAAGGGCCAAACTTGGGTGTGGCTGCGAAGTTGTTGCTATGTGTCTTACAATCAGTGGAATTCTAAACCAGAATATGTCACATCGACCACTACTGCCGTTAGCTATGAAGAGGTTTGTGCCAATCAGGAAAACCTCTTGAAGGAAGACAAATTAAAATTCCAAAATGTTTTCAAGAAGAGcagaaatattaataattccaCGAAAACTTCTTCAAGTCAAGGAATCACTTCAACATCTACAAAGCCTCAGAAATTTTCTCAAGAGCAAAATTCCAAGAACCTGCCATGTTCTAACTCCTTGGGAAATTCTAAGTTAGATAATGACAGGTCCAAAACAGCTGAAAACCTGCCagaaatagatattttaaagCCTAATATTGTCGCAAGAATGCAGTCCAAAGAGTTAGTTGCGGAACCAATTGATGAAGATTTAAGCATGGATATAGAGTCTATTGCCAGTGAATCCAGTGATCTTAGCTTGAGTACAATGAAAGCCCCAGAAGGGCTTACACCAGCCCAGTCGAAGCTCCATGTTCAACTCCGAGGGAAACACAGGTTACTAGAAAAATCCATCAAGCATCAGATTGATGAGTTGGAGAGAATTAAGAAACAAATCGAGATCAACAAACAACTTTGGGAGTTTAATAAACAAttgcaagaaaagaaaagtggAGAAATAGATAAAGGGGTAGAGGGATTGCTTACATCTCCAGCAAAAAGAGGGCTGGAAAGCGAGGGCTTATCAGGTATGGATAATATCAACGAATCCGTCAAGAGATCCCTCGTACAGACAAGTAGTATGCCATATTGCCCAGTGGAAATTCCAGTCAGTTACTATGTAGATATACCACCGATAAACCTCGGTAATCCACCCGATTTCTGTGATATGGAACAAATGGACCCATCAGCAATGGACACTAATGCCTTTACCCCTTTCTCTAACAGTATGCCTTCTAATAGTACCCAAgcttcttattcttattttcccTTCCAGCCTCAAGGTAGATAA

Transcript

ENSQPTT00000058806

CTAGTGATCCATCCCACTAATAGCTAATGGAATATATTAATAGTAGATGAGTGGCCTCTTGTGTTTACTTGACCCAAAAACGTGCCTTGGAGACACATGTTACATAACAAATAGCCATATCCGGCAACGTGACTAGTACTTCACGTGAACCTCTGAAATAATTGTCAATACCGGCTGAAAGAATGTTTGCAGCAAGAATGGGAGACTTCGTTTATCAATATTATGAGGTTATTAACCCTCGGTACTGTTAGAAAACGAGGTTAAAATCTTAATTCTCGTAAAGGAAATCAAAAATGGACGGTCAAGAAGAAGAGATGGCGAGTGACAAGAAAAACGAAGACTCCCAGCTGACCGAAACTAAGAGAGTCAGTCGGAACATGAACGAAAAGAAACGGAGAGACCGCTTCAATCTCTTGATCAACGAGCTTGCTGCTGTTATTTCACCTGGAAACCGAAATGGTAAATTTGAGAAAGTCACTGTCTTGAAAGAAGCGATTGATTGTTTGAGAAGTCAAAAGACGTCCCAATCTAGTCATCCGAGCATCACTCAAAGCAACTGGCAAACTTCACTGGTTGGTGGTTCTGAACTAAGCCAGCTAATCGTAGAAGCCATGAACGGATTTGTTTTAAGCCTAGACTCTTCAGGAATCATAACTTTTGTATCTGATTCAATTCTATCAGCCGTTGGTCATCGGTCCACCGAAATGATTGATAATTCTATTGCTGAATTTTTGGACCAAAGCGACCGGTCTTCTATATTTGTTCATTTAAGTTTGCTTCAACGCGAAGGTGAAGCCTTCCCACCTCCAGCATTGAATTTTACATCTAAATCGAAAGCATTCGGCAAAGCACTTGCCTTCCAAATGCACTTGCTGTACGGTCCACACATCGATAAGAAAGGTTATGTTACAGTGAACTGCCGTTGCCAAGCTTTTGCTATGTCACACACCACCAGCTTTCAACCTGTCACGCTACCCCATGGAAGCTCTCAAAACGCCAAACTCCAGCTTGTTATAGTTGGTACGTTACGACTTCCCAAGCCAAATATGATGGTGCCATTAGCAGATATCAAAGCTAAAGAATTCACATCTAAGTTGACATTAGGTTGGAAATATACCCAGGTAGACCCCAAAGCCTTACTTATAGTTGGGTATTTGCCAACAGAATTGATTGACAAGTCTgcatatttattcattcatgaaGAAGACATATCCAACATAACATCATATCATGAAATGTTGGTTCGCAAGGGTAGGGTTACTACATGCTACTATCGATTCCTGACGAAGGGCCAAACTTGGGTGTGGCTGCGAAGTTGTTGCTATGTGTCTTACAATCAGTGGAATTCTAAACCAGAATATGTCACATCGACCACTACTGCCGTTAGCTATGAAGAGGTTTGTGCCAATCAGGAAAACCTCTTGAAGGAAGACAAATTAAAATTCCAAAATGTTTTCAAGAAGAGcagaaatattaataattccaCGAAAACTTCTTCAAGTCAAGGAATCACTTCAACATCTACAAAGCCTCAGAAATTTTCTCAAGAGCAAAATTCCAAGAACCTGCCATGTTCTAACTCCTTGGGAAATTCTAAGTTAGATAATGACAGGTCCAAAACAGCTGAAAACCTGCCagaaatagatattttaaagCCTAATATTGTCGCAAGAATGCAGTCCAAAGAGTTAGTTGCGGAACCAATTGATGAAGATTTAAGCATGGATATAGAGTCTATTGCCAGTGAATCCAGTGATCTTAGCTTGAGTACAATGAAAGCCCCAGAAGGGCTTACACCAGCCCAGTCGAAGCTCCATGTTCAACTCCGAGGGAAACACAGGTTACTAGAAAAATCCATCAAGCATCAGATTGATGAGTTGGAGAGAATTAAGAAACAAATCGAGATCAACAAACAACTTTGGGAGTTTAATAAACAAttgcaagaaaagaaaagtggAGAAATAGATAAAGGGGTAGAGGGATTGCTTACATCTCCAGCAAAAAGAGGGCTGGAAAGCGAGGGCTTATCAGGTATGGATAATATCAACGAATCCGTCAAGAGATCCCTCGTACAGACAAGTAGTATGCCATATTGCCCAGTGGAAATTCCAGTCAGTTACTATGTAGATATACCACCGATAAACCTCGGTAATCCACCCGATTTCTGTGATATGGAACAAATGGACCCATCAGCAATGGACACTAATGCCTTTACCCCTTTCTCTAACAGTATGCCTTCTAATAGTACCCAAgcttcttattcttattttcccTTCCAGCCTCAAGGTAGATAATGCAGATCCATTATTTTAGGAATGCTATTTCCCAGATTAATAACAAACCATTATTTTATAGTCTATTTCATGGGAGGTGGGGGATTAAACAGCttttatcaatttattttgATCAAATTTTGGGAGTAGATTCAAATTTTGATAGCAAATTCATTGGGCTAGTAGTCGTGACCTAGGATAGCATATACTATACTATAATTCAATGTTCAAGGATTGCATGCATGACCTCATTCTAAATGCATAAAGTAATGAAAATCAAAGcggatgttaaaaaaaaaagcaaaatccatgttgaaatatttcaataaaattgccatttttcaatatttagtagttccaaaaattatccatacccccaccccccacccccccacaAGGAATTTTTTCCAGACCCCCATCTACCCCtagaaattttgattttcttttctcttaccCCCTACCCCTTcgcaaattccaaattcctccatggggggaggggggtatggatagtTTCCGGAACTACACATTAGAACATGATATACATTGAATAAGTTGAATGAACCTAGCTAAGCTAACAAATTaatttagctttttaaaaattagcaGATTACAAGGTCATGAGTTCAAATCCCATTTGAAACTCAGTTTTTTTCTGAGTTCTTTCTCTTTCACCATTCattctattcattcattagACAGTAGCAATTAAATGTAATgaattaacaaaaaaatagaaataaattaaTCAAAATTATGACTATAAAATCATTGGTGTGCTGTAGATACTTCTGAACCTGATCCTTCAAAATAATTTCCTGTAAAAAATTACCGGACCAGAAATGACATGTTTAGAAAGCCATCCGCT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O08785	Circadian locomoter output cycles protein kaput OS=Mus musculus OX=10090 GN=Clock PE=1 SV=1
Q6YGZ4	Circadian locomoter output cycles protein kaput OS=Tyto alba OX=56313 GN=CLOCK PE=2 SV=1
Q8QGQ6	Circadian locomoter output cycles protein kaput OS=Gallus gallus OX=9031 GN=CLOCK PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003739 (this species only)
Transcription factor family	bHLH · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14598 all species →	PAS_11	PAS domain	Domain	Interproscan
PF00010 all species →	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan
PF13426 all species →	PAS_9	PAS domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047230 all species →	Family	Circadian locomoter output cycles protein kaput-like	Interproscan
IPR000014 all species →	Domain	PAS domain	Interproscan
IPR011598 all species →	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR036638 all species →	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR035965 all species →	Homologous_superfamily	PAS domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46055 all species →	CIRCADIAN LOCOMOTER OUTPUT CYCLES PROTEIN KAPUT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0032922 all species →	Biological Process	circadian regulation of gene expression	Interproscan
GO:1990513 all species →	Cellular Component	CLOCK-BMAL transcription complex	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02223	CLOCK, KAT13D; circadian locomoter output cycles kaput protein	EC:2.3.1.48	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.