Gene detail

Detailed information of ENSQPTP00000049591.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031568774.1, ribosome biogenesis protein BRX1 homolog [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

Transcript

ENSQPTT00000059469

CTTGCGTGGCACCTCAGCTGATAAGAATTTTGGTAGCCGCTCTCTTGGTAACCAGgcattcaagatggcgtcgagaaagagaaaaatccAAGATGAAGTCGAAGTCAATGAAAACAGACCTAAAAACACAACAGAGAAGAAAACTAAAAAGGAAAAATGGACCAACAAACAACGCGTTCTCGTTTTCTGTGGACGTGGAATAACACACAGAGCAAGACATTTGATGTTGGACCTGAGAACATTGCTTCCACACCACAAAGCAgACACAAAACTTGACAGAAAGGACAAGCTCTTTATAATCAATGAGGTTTGTGAGATGAAGAACTGCAACTCATGCATATACCTGGAAATGAGAAAGAGAAAGGACCTTTTTATGTGGTTTTCCTTTGCCCCTCATGGCCCTTCTGctaagtttttagttgaaaATGTTCATACAATGGATGAATTAAAGATGACAGGAAATTGCTTGAAGGGGTCAAGACCAATTCTTTCATTTGATCAGcaTTTTGACAAGAAACCAGAAACTCAGCTCTTAAAAGAAATGTTTATTCAAATATTCAGTACTCCTAACTACCACCCAAAAAGTAAACCATTCATTGACCATATTATGACGTTCTCTAAACTAGATGATGATAGAATATGGATTAGAAATTTCCAGATTGTAGAAGAAGATGGAACCTTATTGGAAATTGGGCCTCGATTTGTTCTTAACCTGGTCAGGATATTTGAAGGCAGCTTTGGAGGACCAACACTTTATGAGAATCCACACTATCAGTCTCCTAATGAGCATCGACGCCTCATAAGACGCGAAGCAGCCCACAAATACCTCGACAGAGTGGAATCAAAGCAATCCCTTGAAGTGCGACGCGAAGCCAATAAAGATATTCCCCGTGATGAGGAAGACGTGGACGACATATTCCATACTATAACCCAGTCGGACATCGACAAAGCGAGGGCTAATTCCAAAAAGACTATTCAGAAATAAGATTCCTCAATAAaatccttttgttttcttaagaAATGAGCAGTCAAACaggatttatttttaatatctcAATGAACAAATACATAAAGGTTGTTTCTTCGTCTGTGAGAGATAAAGATGGGGCGAAGATCAACGACCTTGTACAAGAATGACGCGCAAAGACTCAAAACTTGGTTATGGAATCTTGAGTTTATTTACCCAAAGCCATCATACGAAATACCTCAAGTGACTACTTTTTGCTGGTTAAGAAATATAATAACTCTCTGTTTTGTGGTTAGAAAACTCTTTTGTTCGTTGTAAAGCTCCACCCATAGACCGAGCTCTTCTGATATTCTTTTACAAACGCGACATTCAGGAAACCACATTTTTTCTAGGGAGGAATCTGGGATATTTTAGTGTTTTTCTGTCATCTGTCGACAAGGGGATCGGATCTTGAAAGGGGTCGACTTGAGACCAAGAGACGCCGCTTTGATTGTCATAGTTTGAATATCTGCAGTTTCACTATTTCTAGGAAATCGAAATAAATTCCTCAAATTCTGACCCCACAGTGTATTTAGTTATAATCGCTTCATATCAGTTGAATTGGTAAAGTTTATTTCTGTTCTATAACTAGTAAGTCTGGAACGATATTTGCAACCAAAATATCTTGACGATTTGCTCTCGCTTCAACTACCTACGCAGGCTGACAAAAAAAATCCGTTTGAAAAAGAGGCTGTTAACTTTACGTCTATTTATGTATTTGCTACTGAAActgaattattttctttttgattcATCCCATTGATAGTTTTTTTATGAATGTAATTCAGTGCTGAACAGCGATTAAgcggcggggggggggggggggggggagtgatCTCAAGAAGCCTATCTATTTTAAAGCAATAACCGATTTAAAAACATTGGGCCGCCCTTTTACAATGGTGCTTAGAGATTTTCAAAACGGATGGAATTCTCTGCAAACTAATCAAATCATAACAACATTTCGGGTACCAGCAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3SZZ0	Ribosome biogenesis protein BRX1 homolog OS=Bos taurus OX=9913 GN=BRIX1 PE=2 SV=1
Q9DCA5	Ribosome biogenesis protein BRX1 homolog OS=Mus musculus OX=10090 GN=Brix1 PE=1 SV=3
Q8TDN6	Ribosome biogenesis protein BRX1 homolog OS=Homo sapiens OX=9606 GN=BRIX1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004742 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04427 all species →	Brix	Brix domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007109 all species →	Domain	Brix domain	Interproscan
IPR026532 all species →	Family	Ribosome biogenesis protein BRX1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13634 all species →	RIBOSOME BIOGENESIS PROTEIN BRIX	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0019843 all species →	Molecular Function	rRNA binding	Interproscan
GO:0000027 all species →	Biological Process	ribosomal large subunit assembly	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14820	BRX1, BRIX1; ribosome biogenesis protein BRX1	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.