Gene detail

Detailed information of ENSQPTP00000049953.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031557599.1, U1 small nuclear ribonucleoprotein 70 kDa-like [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

Transcript

ENSQPTT00000059854

CAGAGCAGCACgagtccgccattttgaagaATCAAAGAAGATGGCGTCGCGTcatttttaattgatttttacCCTCTTTTCAAAgcctttttgaattttaagaGTAAAATAACATGACTCAATATCTCCCTTCGAATCTTCTTGCTTTATTTGCGCCAAGGGATcctcttcctttccttcctccgCTTGATAAGCCGACGTGGTTGAAGAAAAAACCATGGCTTTATCAAGGAGTTTCTTCGTATTTACACGTGTTCGAGGATCCTAAGGACACTCCACCTCCAACTAGAGCTGAAACAAGAGAGGAAAAAATCTTAAGAAAGagaagagaaaaagaagaacgaGTTAGGAGTGATATAGAAGAAAACATTAAAGAATATAATCCTCAACTCGATCCCAATGCTGATGGTGATGCATTTAGAACACTGTTTGTCGGCAGAATTAATTACGATACCTCAGAGTCCAAGCTACGAAGGGAAATGGAAATATATGGACCAATAAATAACATCACGATGGTAATTGACAAGAAGACATCTAAACCCAGGGGGTATGCCTTCATTGAATATGAACATGAACGAGACATGCACGCGGCTTACAAACATGCTGATGGAAAAAAGATCGACGGCAGAAGGGTTGTAGTCGATGTAGAGCGAGGACGGACTGTAAAAACATGGAGGCCAAGGAGATTAGGTGGTGGTCTGGGTGGAACCAGAGTGGGAGGACCTGATCAAAATGTCAAACACTCAGGACGTGTGGATAGCACTGAGAACTATGATGATAGCAAGGATCGTGATAGAGAACGTGAAAGAGGTGATAGAGACCGTAGTCGTGATCGTGAAAGACGTGAACGTCGTGAGCGTGACCGTGGCGAGCGTGACCGGGGCGACCGTGATCGCGGCGATCGTGATAGAGACCGAGATCGTGACAGACGAGAACGAGATAGATATAAGGAGCGTGACAGAGAGGGCAAAGATAAACGTAAACGCAGTAGATCACGTGACAGGGACCGGGATCGTGAACGAGAAAAGAGGCGGCGTGATCGTGACCGAGGAGAACGTGACCGAGGAGAGCGTGACCGTGGAGAGCGTGATCGTGGAGATCGTGACCGTGGAGATCGTGACCGTGGAGATCGTGATCGTGAAGAGCGTGATAACGAGCGTGACAATGATCGCGATTATGATCGCAATGATGACCGTATGAGGGATGAGCCCGAAGAGTACGGACAGTACGCTAACAACAACTCGGTGCATAATAACGCTGACTTGGAGATGGTGGACTGAAATCTAGTAACGtgactttttttaaacatttaaacTAACAATGCGACCCAACGGACCTTAAATAACTATTGTAACGTAATGGTTATCACGTGATTAACGGCATCACGTGATAACTACATTAGTCGACGACTTGGCCAAAGTTACTTAACTTGATGGGGACAATAATTTGTGGAACTTCAAGTAGAGTGTAAACCATACatccgtgaaaaagttaaataCTATCAAAAtggtacaaattagtgcaaaactTTGTAGGTCTACAGTCTACTGAGGtcactgaacttactaatttgtgccaTTTCTTACGATGGCTCTCACGGATATATGCTATGCACTCTTTTGTAATACTGAAACCTATTCACTGTTTGTCACGACGTGATCTGATATCTCATTGACAGCCTTAAACTGTATTCTTTTACTCACTTTAGTTCGGTACACCAATATTTTTGTCATCTCATCCCACCACATATTCATTTATATACATTGAAATAATCTTAAATGAAGCTATCATGTAGATGTAAGATGCTGGTCTTTTCTCTAGTGACTGGTTTGTATTCTCATTACACAGGGACTTTCTTTATGTATAGTGTATTGTGAGCGAATTTCATTTATATGAAGACAGCATCAATCAAGGCCAGCCATGAGAGAAGGCAGAACggattgaatctggtctaaccTGATTTACATGATGTTGTGCCTCATGTAATGGCTGCCATAACGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P08621	U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens OX=9606 GN=SNRNP70 PE=1 SV=2
Q1RMR2	U1 small nuclear ribonucleoprotein 70 kDa OS=Bos taurus OX=9913 GN=SNRNP70 PE=2 SV=1
Q62376	U1 small nuclear ribonucleoprotein 70 kDa OS=Mus musculus OX=10090 GN=Snrnp70 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003410 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF12220 all species →	U1snRNP70_N	U1 small nuclear ribonucleoprotein of 70kDa MW N terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR051183 all species →	Family	U1 snRNP 70 kDa and U11/U12 snRNP 35 kDa	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR034143 all species →	Domain	snRNP70, RNA recognition motif	Interproscan
IPR022023 all species →	Domain	U1 small nuclear ribonucleoprotein of 70kDa N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13952 all species →	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005685 all species →	Cellular Component	U1 snRNP	Interproscan
GO:0017069 all species →	Molecular Function	snRNA binding	Interproscan
GO:0030619 all species →	Molecular Function	U1 snRNA binding	Interproscan
GO:0071004 all species →	Cellular Component	U2-type prespliceosome	Interproscan
GO:0071011 all species →	Cellular Component	precatalytic spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11093	SNRP70; U1 small nuclear ribonucleoprotein 70kDa	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.