Gene detail

Detailed information of ENSQPTP00000050150.1 in Actinia mediterranea

Genomic Location: chr14:5063696...5092230
NR annotation: XP_031567019.1, nephrocystin-4-like [Actinia tenebrosa]
Species Actinia mediterranea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSQPTT00000060052

ATGCAACAACCCCAAATGGccgacgaagaagaagaatcctGGCAAGAATTTTTTGATAACAACAGGACAATCCTCCCCCATCCGTCCAGAAGGATCATTGATGGTCAAAAACAAGCTATTACAGGTTTTTGTTTGACCATAAAAGCTGTTGAAGGAGTTCGTTTGCCACAGGCTCTTACAAACGAAATAGCACCAAATGATGCAGAATTTCAACTAAGAATCACTTTCTTTGATACTGCAAACAAGTACTTTTATGGAAGCACTTGGCTTGGTCCAATATTAAGTGCTGCAAGTTTTGATAATGGAAGGTTTACCATAGATAGTGAAGAGCCTTTATATTTTCACTCCTCATTGAACGACTACACTTGTGTAACAGCTGCTGAGATTATAGTGTTTGGTAAAAACAACCAAGGATACAGTCTAGGATGGacatttctaagaatttttgATAGAGTAAATGAACTTAGGGATATTTCTACGCCTCCACTCATTCAAAGGCATTCAATCTACCGTGGTTCTTTGGGATTGCTGCATTATCTACCACCACAAGATGATCTTGAAGGATACCTTGATAACCAAAAAATAGAAGGTTGCTATATCTGTTATTCACTACAAATCCATCCTGCCCTGGAAAAAGTCTTCCATCTTTTTCCAGAAAATCTTCTTCTTGGAGGAGATGATATTGTTCCTGGAATATCTGAAACAAAGAGTGAAGATGATGAAGTCATTAATATTCTGAGAAAGCCTAGACTACTAAAAACATACCCATGTTTTATCAACAAGTTAAGTGTTCATTTTGAACCATCAATTGAGGATTTTGAAGAACAAATGTTGGACAAGCTTAATCTCGATAGACTGCATAAAAGTAATATTTCGCCTGATGATGGTCTGAGAGTTTCAGTAGTTGAAAGGAGATTAAGGGTTGGCGTACATAATGGATGGACTTATGTTAGTGAGCCTCATGTAGTATATCTAGAGCCTGAATATGAAGGTGGTGGTAGTAAATCAGGAAGAAGATCTCCATCTCCATCACAGGGATCTCTCAAGAGTGCTGCATCCAAGATAATCTGCCTTGTGTTGAGAAGTAGACTAGAGTTGGTAGAACTAGTACAGCATCATTTATGTGCAGTTGTCTTTGAAGTAGAGTATGTAATATCTGAGCCATTTGCTCAACCTCTGATTGAAACCAAGAAGAAAAAGCCATCTCTGTCAGGAAGTCTGATGAGATCCAACAAACATACAGTTACTGTTAAATTTGGAGTGTGGACTCCTTTTGAAGAAAATCGAATTGCTGAAGAGAAGGAAATTTCATTAGATCTAGAAGATGGAGCAAAAGTCTATCCTGGCATGAAAATGGTTTATAAAGCTAACAAGAATAAGATTCctggtaaaataaaatttatgttTACCCAGCAAAGAAGAAAAGGGAGCAGCATGCGCTCCAGTATTCACGGTTCTCAGACATTGAGTATACCACAATTAATGAAAGCAGCATCTAGTCTTGGGTCAGGGCAGCTGGTATCTACACCTTACAGCTCAATAGCTGATATTCCAGGAAATCTTGACCCAAATGTAAATTTGAGCCCAGGAATCATGGGACGGCCACCTTTACCAGAGAGGACAAGAGCTAGTGATGATTCCATTAATAGAGACTTCAATACACAGGGTTTTCCAAGAGCCCATGGCACAGCTCCTGCACCTGCACCTGTTTCTAATCTAACAGAAGTACCTTATAGTCCTTATCATACTCCCCTGTTGCTAAGCAATGTTGCAGGGATGTCAAGTGGTACATCAACTTTGACACGTGCAGCCTTTGCTCAGCTATCCAGTACTGGCTATACATCTATTACTGATCGTCATGGTAACCCACCAATGGTGATTGACCCTGGTGAGGTGGTGCCATTGAATATAGAACATGAGGTGTCAGATTCCTTACAAGCCAATGAAATAGTAATACAGTTTCTTGCCCTTTCAAGCTGTTTTGGGCATCAATCAGTCTTCTTCACTTTTCAGTTCTACAGATTTCCACAAGTCACAACTGAAAGgctttttttaaaaggttcaGAGAAACAAGATCAACAGGGTCTTTTATGTATTTTACAAAAACTTTCCAAAGATGGTTCCATATCAAATGAAGCACCTGGACTTGTGCTGAAGTATCTTGTTGACCCAGCATTCATGCAAGAAGGTGAACGTAAAGTCTTTAGTCGTTATCTCCTTGCTCAAAATATACACATTGACGTATGGGATGGAGATTCTCTCCTACTTATTGGTTCTGTTTCCTTGGAACTAAAGCATCTCCTTCGGCAGGGAAGAGAAGCGGTTCTTGTTAGTCATGAAGTGGATATTGTATCAGTTGAGTATTCAGAGGACTCACCTGCCATGACTGGAGACGTGAACCGTACTGGAACAGTTCGCCCTATTGGTATCAAGAGTAGCATCAAGGGGAGACTCCATCTTCGTATTGCAAACATAGGACATCACAGTGAAATGCCTACTGCTAGATTAGGTACAGTGCCAAAAAAGCGTTCTCATGTGGTAATGTCCGAAACAATTACTGGTTCATTCAATGGTATGGGTTCCACTGTAGGCAGAAAGGATAGATGTAAAGCAAAGTTACTAGCAGAATGTGATGCGGAATTAGCTTCAGTGCTTTTTAGTCGGCAAGGAAAAGTGAATAAGGATGATAAATCTATCAATCAAGATGACGCCATTAGACAAAGAAAGCTTCAAAGAATGCAGGCTGTTCGTCAGACAACAGGAGTCAGTGATAACCTTCCACTTATAatcaaaaaagaagaaaaacttcaacgagctaggGACTTGAAGACAATACAGTTATACAGAGACAAGAACAAACATGAGGGTATAGTCTCGCTTCTGTCTGCCACCATTACTACTACTTATACGATCTACCCATCCTTTGGTACTGCCGAGTTCTTTGAATTCGCTATTAGAAATCCATACGATATAGAACAGACTATAGCTATACAGTGCGATGACAAGGAACTCATGGTAATAACAGATACCAGAGAATGGAGGCATTTCAAGAAATTCACAGAAACGTATTCAACCATGGAAGAAAACATGTTTAACACAGCAGATACAACATTCCCTGAAGTGTTTCTGCGTCCACGAGAAAGCGTTCACATCCCATTTAAATTCCAAACGTTCAAAGCAGATCATAGTGTTCCACAACAAGGTCCATCTCATCCATTCAAACAGCAAATCACCACGTTTAAAACGTTTGCGACCGTCGAAGACAACAAGCTTCAGCCTCATACAGTTAAGGTATCATTCGTAATGAAAGACAGCCGACCAATTGCCATACTAAACCTGAACATAGAACCAAGGCCACACATTATCGACCAAACCTTTCGCTTCTACCATCCGGAGCAATCTTTCCTAAAAAAGTCCATTCGGTTGCCTCCATGGCATTCTTTACCAGGTGCTCCTGTGCTTGATGATCAGGCTCCTCCTCAGGTTCATGTTCGATGTAGTGATGTGAACGCTGTTTGTGAGGCAAGGAGAGTGaaGCCTACAGAACCCCAAGATGTATTCCTCAAAATTGCCTGTGGTCCTTCTCCTTCTGTCAAGCggttttttgttcttttgtaCATAGATCTTTTCTTTGCGACTCCTTGTCAGACTTGGCAGTTTTATGTTCATTCGTTACAGAGGGTTGACATGAGTGCCGTCGAGGGACAGACCAGTAGATTATCAGTAATATTACGTGGTACCCAGACTTCTAGACTTGTTAGGTGCTACTCGTCTCATCCTGCAGAATTACAGGTTAGTCCTATGGATCCCATTATGTTGATGGCTAACACGGTACGTGAGGTTACTCTCAGCCTCACCCCACTCTCCTCGGGATCTACTCGCTTTATGTACGTCAACGTCGTTGACAGTGAATTTCATCAGCTTGTTCGCACGTGGTTAGTTTGTGCCTCGTGTCAACAACCAGTCATCTCTAAAGCCTTTGAGCTACAGCTTCAAGTTGGAGGAGGAAAAGGTTCCAATAAGcgAGTGTCCTTCACCAATCCATACCCTACCAGAAACACCTTTAATCTGCGATGTAACAGGCCTGATATACTTCAGTTTAAAGAAAACGTAATCGAGgTCGGTCCTGGAGAATCACATCATATTGGATTGCGGTTTGCTCCTCAGTCGACGATTGGAAACCAACAAGTCTTGATATTCATCAACGATTCAGAGGGAAAGAATGAAGAGACTTTTAGCATAAGTGCTATTTACAAGTAA

Transcript

ENSQPTT00000060052

AGAAAACGATGGATTTATTGATGATTTCTCATAAATTTTGGCTTTTCTTTgcataaaatcaaaattacatgtaaatttgttttcttttactGCAAACATTTACACTATTTgtattgggttccctgtgttgcCATAAAAGGGAAGCTTTCTTTTTCGGCGCCATGATTTGCATGTCAAGCAGCCAGTGATTATCTACAATGCAACAACCCCAAATGGccgacgaagaagaagaatcctGGCAAGAATTTTTTGATAACAACAGGACAATCCTCCCCCATCCGTCCAGAAGGATCATTGATGGTCAAAAACAAGCTATTACAGGTTTTTGTTTGACCATAAAAGCTGTTGAAGGAGTTCGTTTGCCACAGGCTCTTACAAACGAAATAGCACCAAATGATGCAGAATTTCAACTAAGAATCACTTTCTTTGATACTGCAAACAAGTACTTTTATGGAAGCACTTGGCTTGGTCCAATATTAAGTGCTGCAAGTTTTGATAATGGAAGGTTTACCATAGATAGTGAAGAGCCTTTATATTTTCACTCCTCATTGAACGACTACACTTGTGTAACAGCTGCTGAGATTATAGTGTTTGGTAAAAACAACCAAGGATACAGTCTAGGATGGacatttctaagaatttttgATAGAGTAAATGAACTTAGGGATATTTCTACGCCTCCACTCATTCAAAGGCATTCAATCTACCGTGGTTCTTTGGGATTGCTGCATTATCTACCACCACAAGATGATCTTGAAGGATACCTTGATAACCAAAAAATAGAAGGTTGCTATATCTGTTATTCACTACAAATCCATCCTGCCCTGGAAAAAGTCTTCCATCTTTTTCCAGAAAATCTTCTTCTTGGAGGAGATGATATTGTTCCTGGAATATCTGAAACAAAGAGTGAAGATGATGAAGTCATTAATATTCTGAGAAAGCCTAGACTACTAAAAACATACCCATGTTTTATCAACAAGTTAAGTGTTCATTTTGAACCATCAATTGAGGATTTTGAAGAACAAATGTTGGACAAGCTTAATCTCGATAGACTGCATAAAAGTAATATTTCGCCTGATGATGGTCTGAGAGTTTCAGTAGTTGAAAGGAGATTAAGGGTTGGCGTACATAATGGATGGACTTATGTTAGTGAGCCTCATGTAGTATATCTAGAGCCTGAATATGAAGGTGGTGGTAGTAAATCAGGAAGAAGATCTCCATCTCCATCACAGGGATCTCTCAAGAGTGCTGCATCCAAGATAATCTGCCTTGTGTTGAGAAGTAGACTAGAGTTGGTAGAACTAGTACAGCATCATTTATGTGCAGTTGTCTTTGAAGTAGAGTATGTAATATCTGAGCCATTTGCTCAACCTCTGATTGAAACCAAGAAGAAAAAGCCATCTCTGTCAGGAAGTCTGATGAGATCCAACAAACATACAGTTACTGTTAAATTTGGAGTGTGGACTCCTTTTGAAGAAAATCGAATTGCTGAAGAGAAGGAAATTTCATTAGATCTAGAAGATGGAGCAAAAGTCTATCCTGGCATGAAAATGGTTTATAAAGCTAACAAGAATAAGATTCctggtaaaataaaatttatgttTACCCAGCAAAGAAGAAAAGGGAGCAGCATGCGCTCCAGTATTCACGGTTCTCAGACATTGAGTATACCACAATTAATGAAAGCAGCATCTAGTCTTGGGTCAGGGCAGCTGGTATCTACACCTTACAGCTCAATAGCTGATATTCCAGGAAATCTTGACCCAAATGTAAATTTGAGCCCAGGAATCATGGGACGGCCACCTTTACCAGAGAGGACAAGAGCTAGTGATGATTCCATTAATAGAGACTTCAATACACAGGGTTTTCCAAGAGCCCATGGCACAGCTCCTGCACCTGCACCTGTTTCTAATCTAACAGAAGTACCTTATAGTCCTTATCATACTCCCCTGTTGCTAAGCAATGTTGCAGGGATGTCAAGTGGTACATCAACTTTGACACGTGCAGCCTTTGCTCAGCTATCCAGTACTGGCTATACATCTATTACTGATCGTCATGGTAACCCACCAATGGTGATTGACCCTGGTGAGGTGGTGCCATTGAATATAGAACATGAGGTGTCAGATTCCTTACAAGCCAATGAAATAGTAATACAGTTTCTTGCCCTTTCAAGCTGTTTTGGGCATCAATCAGTCTTCTTCACTTTTCAGTTCTACAGATTTCCACAAGTCACAACTGAAAGgctttttttaaaaggttcaGAGAAACAAGATCAACAGGGTCTTTTATGTATTTTACAAAAACTTTCCAAAGATGGTTCCATATCAAATGAAGCACCTGGACTTGTGCTGAAGTATCTTGTTGACCCAGCATTCATGCAAGAAGGTGAACGTAAAGTCTTTAGTCGTTATCTCCTTGCTCAAAATATACACATTGACGTATGGGATGGAGATTCTCTCCTACTTATTGGTTCTGTTTCCTTGGAACTAAAGCATCTCCTTCGGCAGGGAAGAGAAGCGGTTCTTGTTAGTCATGAAGTGGATATTGTATCAGTTGAGTATTCAGAGGACTCACCTGCCATGACTGGAGACGTGAACCGTACTGGAACAGTTCGCCCTATTGGTATCAAGAGTAGCATCAAGGGGAGACTCCATCTTCGTATTGCAAACATAGGACATCACAGTGAAATGCCTACTGCTAGATTAGGTACAGTGCCAAAAAAGCGTTCTCATGTGGTAATGTCCGAAACAATTACTGGTTCATTCAATGGTATGGGTTCCACTGTAGGCAGAAAGGATAGATGTAAAGCAAAGTTACTAGCAGAATGTGATGCGGAATTAGCTTCAGTGCTTTTTAGTCGGCAAGGAAAAGTGAATAAGGATGATAAATCTATCAATCAAGATGACGCCATTAGACAAAGAAAGCTTCAAAGAATGCAGGCTGTTCGTCAGACAACAGGAGTCAGTGATAACCTTCCACTTATAatcaaaaaagaagaaaaacttcaacgagctaggGACTTGAAGACAATACAGTTATACAGAGACAAGAACAAACATGAGGGTATAGTCTCGCTTCTGTCTGCCACCATTACTACTACTTATACGATCTACCCATCCTTTGGTACTGCCGAGTTCTTTGAATTCGCTATTAGAAATCCATACGATATAGAACAGACTATAGCTATACAGTGCGATGACAAGGAACTCATGGTAATAACAGATACCAGAGAATGGAGGCATTTCAAGAAATTCACAGAAACGTATTCAACCATGGAAGAAAACATGTTTAACACAGCAGATACAACATTCCCTGAAGTGTTTCTGCGTCCACGAGAAAGCGTTCACATCCCATTTAAATTCCAAACGTTCAAAGCAGATCATAGTGTTCCACAACAAGGTCCATCTCATCCATTCAAACAGCAAATCACCACGTTTAAAACGTTTGCGACCGTCGAAGACAACAAGCTTCAGCCTCATACAGTTAAGGTATCATTCGTAATGAAAGACAGCCGACCAATTGCCATACTAAACCTGAACATAGAACCAAGGCCACACATTATCGACCAAACCTTTCGCTTCTACCATCCGGAGCAATCTTTCCTAAAAAAGTCCATTCGGTTGCCTCCATGGCATTCTTTACCAGGTGCTCCTGTGCTTGATGATCAGGCTCCTCCTCAGGTTCATGTTCGATGTAGTGATGTGAACGCTGTTTGTGAGGCAAGGAGAGTGaaGCCTACAGAACCCCAAGATGTATTCCTCAAAATTGCCTGTGGTCCTTCTCCTTCTGTCAAGCggttttttgttcttttgtaCATAGATCTTTTCTTTGCGACTCCTTGTCAGACTTGGCAGTTTTATGTTCATTCGTTACAGAGGGTTGACATGAGTGCCGTCGAGGGACAGACCAGTAGATTATCAGTAATATTACGTGGTACCCAGACTTCTAGACTTGTTAGGTGCTACTCGTCTCATCCTGCAGAATTACAGGTTAGTCCTATGGATCCCATTATGTTGATGGCTAACACGGTACGTGAGGTTACTCTCAGCCTCACCCCACTCTCCTCGGGATCTACTCGCTTTATGTACGTCAACGTCGTTGACAGTGAATTTCATCAGCTTGTTCGCACGTGGTTAGTTTGTGCCTCGTGTCAACAACCAGTCATCTCTAAAGCCTTTGAGCTACAGCTTCAAGTTGGAGGAGGAAAAGGTTCCAATAAGcgAGTGTCCTTCACCAATCCATACCCTACCAGAAACACCTTTAATCTGCGATGTAACAGGCCTGATATACTTCAGTTTAAAGAAAACGTAATCGAGgTCGGTCCTGGAGAATCACATCATATTGGATTGCGGTTTGCTCCTCAGTCGACGATTGGAAACCAACAAGTCTTGATATTCATCAACGATTCAGAGGGAAAGAATGAAGAGACTTTTAGCATAAGTGCTATTTACAAGTAAAACCAGATTTGTATAGCAACGGAGACAAGTCacgtaatttattttatagacTTTATTAAACTACATATCTGCCCTAAAGTTGGGAACCTAAACttagatattttttcatgatAAGCCAAGTTTTCTCGTTATGAATGGCGAAAATAATCACGTGATCTTTTTATGTCGATGAACGGATGACAAAACCTTTTTACTTATCTCTGTAATGTGATATAAGTGTTTATCTTGCCTTACAGCTCTCTGAGTGTTTATATCCAAATACACAGACATAGGCAGCCGTTATATCTCGGttttataaatgttttatcatttttgcgCGAGCGTGTCTTTACCCTGACTAATTAAACTATTTATATGTATAAAACTATTTATGTATATGCCTCTAATTTTAACAAGGTAGCCAGtcaatcagcgcgcgcgttaTATGTCAAATATTTAATCCATGCCCCAATTAGCGAGGAcgttatatttcaaatatttgataaatatgtatatttaGCTTGTTTTCAGATATAAATTTATTAGAACATTATTTGGCATTGTACTTTACCTATTAATAAATTTGGAAGGCCACACGTTTTTTATTGTCAATTGTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B0DOB4	Nephrocystin-4 OS=Xenopus laevis OX=8355 GN=nphp4 PE=2 SV=1
P59240	Nephrocystin-4 OS=Mus musculus OX=10090 GN=Nphp4 PE=1 SV=2
O75161	Nephrocystin-4 OS=Homo sapiens OX=9606 GN=NPHP4 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003037 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for ENSQPTP00000050150.1 in Actinia mediterranea.

InterPro

InterPro term	Type	Description	Source
IPR029775 all species →	Family	Nephrocystin-4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31043 all species →	NEPHROCYSTIN-4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0035869 all species →	Cellular Component	ciliary transition zone	Interproscan
GO:0036064 all species →	Cellular Component	ciliary basal body	Interproscan
GO:0090090 all species →	Biological Process	negative regulation of canonical Wnt signaling pathway	Interproscan
GO:0097546 all species →	Cellular Component	ciliary base	Interproscan
GO:0097730 all species →	Cellular Component	non-motile cilium	Interproscan
GO:1904491 all species →	Biological Process	protein localization to ciliary transition zone	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16478	NPHP4; nephrocystin-4	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.