Gene detail

Detailed information of ENSQPTP00000050413.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031558291.1, mutS protein homolog 4-like, partial [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

Transcript

ENSQPTT00000060316

TGTGGACCACCTAACATCTATGTGCGTACAAATCCCTAAGCAAGAAACAGTAAAAACTGCAGAGTCCAAAATCACTGCCATCATATCCCTTAAACATACATTAGAACTTGTGGAGCCATTATGTGAGGCCCTCAAAGAAACTGAAACACCGCTACTTAAAGCATATCATGAgTCGCTTAATGATCCGCGATTTAAATCAGTGGCTGAAAAAATCCATGCGGTAATTCATGACGATACACGTTATCAAAAGGGAACCCTTAACATGAGGACTCAGAAGTGCTTTGCTGTAAAGCCGCATGTAAATGGACTTCTTGATGTTGCCCGACGGACATACACTGAAACTGTTGATGACATTACAGatCTTATCAAACAACTCTCAGAAAAATACGAGCTACCTCTAAAAACGGGTTTCAACGCCACCAGGGGATTTTACATCCAGCTTCAACTTAATCGTGATAACGATATAGACACGAGTACACTTCCAAGTGAGTTCATCAAAGTTGCGAAAGTTAAAAGTACAGTAACGTTTTCTTCTGTCGATCTGATTAAATTGAATGACAGAATCAAGGAGTCACTGAACGAAATATACCTGATGGCTGATGTGGTCGTGTCGGAGCTTCTACGTGAAATTCGTGATCACATTGGATGTCTGTATAAATTAGGAGAGCTTGTTAGTACCTTAGACATGCTAACATCTTTTTCCCACCTGTGTACGCTGTCGGACTACGTTCGACCGGAATTTACAGATACATTAGCAATCAAACAAGGACGTCATCCTATTCTGGACAAGATTCTCCCTGAAGCTCCTGTTGCTAACAACATGtacGCAGCAGATGGTACGAACTTTTTCATCTTAACTGGGCCCAATATGAGTGGGAAATCTACTTATCTAAAGCAAGTGGCACTCCTTCAAATCATGGCACAAATGGGTAGCTTTGTTCCTGCTCAATATGCTTCTTTCAGAATCGCTGATCAAATCTTCTCCAGGATTGGGAGTGATGACGACATTGAAACAAACTCGTCTACCTTCATGGTCGAAATGAAAGAAGTGAACTACATCTTGCAGAACGCTTCTGAAAAATCCCTGATAATAATCGATGAACTTGGAAGGgGTACAAGTAGCGAAGAAGGTGTTGGAATATGTTTTTCGATATGCGAGAACCTCTTGGAAACAAAGAGATCCTTCAGTGACGAAGCTGGTTGTAACAAGATACTGTATTCTCACACGCTATCAAAGGGACGCACAGAGGAAAGACACTACGGATTACAGCTAGCTGAAATTTCAACTTTGCCGTCGTCGATCATCAAGTCGGCAAAAGAGGTTTCAAATACCATTTCCAGAGGTGAAAAGTTGTCGAATTTGCTGTCTCCAGAAGGTCGAGTTCAAAAAGCCAAATTCAGGTTGGCAACAAAACTGTTCCAAGCAGCCAACAACTCACGTCTGGATAAACAGGGTTTGTGGTTATATCTTAATGGATTGAAAAAGCAATACCTTCAGGATATCAAACAAACAGAAGAGTAAGCAAAACCTATGCTAATACTGCAAAAATTCAATCTAGAAGTGTCATTTGTATCCTGCTTGCCAAAGGTTTTGAAAGTTAATTCATTCAAtcctcttttgtttttgttgtttatttattttcttgatgtTGTATCTACGTATGTTGTCCTTTCGTAATACATTTACAGCTGTAACACAGGGACAGGCTAAAGTATCCGTATTAAATGGGTGTCCGGGTTAAGGGGGCTCTCAAAATATACGTCATAGACACGTGTCAGTTTTGACAATTGCAATGCATTGTTTGCCACAGCAAAACTTTCCAAGTAGTATTTTATTATCTCTCGTTTAAAAGGAAATATTTCACTATAAACGCCGAAATAAGCTATTTCTAAaagatattttatgaatatctCCACCGACAagtcttattttctttatcttgtttatTGAACTGAAAACCTGGCACTACACTGTAGCAATTAATGAGCTTCGAACAAAATGTTCTCTGATTGGAGAGCATGGAGAAATTGAACACTGATTTAACGGATAGCCCTTGCCTTTTAATTTCTTAGTtacaaatgataaatattattttattagccTCGGTACTATCAACGCGGGCAAGCAGTAATTTGGAAAAAATCATATCTACCAAGCTTGCAATCAATACCGCAACCTCAGTCATAACTAATTGATGAGGGACTTTATTTgtgtttttattataaattgGATCTTTTTCTCATGTCATAGCTGGACGTTATCTTTTACGACATCtgcagaaagaaaaaaaagaaaacatattGACTTTTCGCTAAGTTGTTGGAAATCTTCACTTGCTCTCAGACCAATG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O15457	MutS protein homolog 4 OS=Homo sapiens OX=9606 GN=MSH4 PE=1 SV=2
Q99MT2	MutS protein homolog 4 OS=Mus musculus OX=10090 GN=Msh4 PE=2 SV=1
F4JP48	DNA mismatch repair protein MSH4 OS=Arabidopsis thaliana OX=3702 GN=MSH4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003439 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05190 all species →	MutS_IV	MutS family domain IV	Domain	Interproscan
PF00488 all species →	MutS_V	MutS domain V	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000432 all species →	Domain	DNA mismatch repair protein MutS, C-terminal	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR045076 all species →	Family	DNA mismatch repair MutS family	Interproscan
IPR007861 all species →	Domain	DNA mismatch repair protein MutS, clamp	Interproscan
IPR036187 all species →	Homologous_superfamily	DNA mismatch repair protein MutS, core domain superfamily	Interproscan
IPR007696 all species →	Domain	DNA mismatch repair protein MutS, core	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11361 all species →	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006298 all species →	Biological Process	mismatch repair	Interproscan
GO:0030983 all species →	Molecular Function	mismatched DNA binding	Interproscan
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0007131 all species →	Biological Process	reciprocal meiotic recombination	Interproscan
GO:0140664 all species →	Molecular Function	ATP-dependent DNA damage sensor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSQPTP00000050413.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.