Genomic Location: chr14:11476943...11482766
NR annotation: XP_031560427.1, tRNA (cytosine(72)-C(5))-methyltransferase NSUN6-like isoform X1 [Actinia tenebrosa]
Species Actinia mediterranea · all data for this species · gene families
| CDS |
| ENSQPTT00000060889 |
| Transcript |
| ENSQPTT00000060889 |
| Protein |
| ENSQPTP00000050979.1 |
| UniProt accession | Description |
|---|---|
| Q8TEA1 | tRNA (cytosine(72)-C(5))-methyltransferase NSUN6 OS=Homo sapiens OX=9606 GN=NSUN6 PE=1 SV=1 |
| Q7TS68 | tRNA (cytosine(72)-C(5))-methyltransferase NSUN6 OS=Mus musculus OX=10090 GN=Nsun6 PE=2 SV=2 |
| Q84MA1 | rRNA (cytosine-C(5))-methyltransferase NOP2C OS=Arabidopsis thaliana OX=3702 GN=NOP2C PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005230 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01472 all species → | PUA | PUA domain | Family | Interproscan |
| PF01189 all species → | Methyltr_RsmB-F | 16S rRNA methyltransferase RsmB/F | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR018314 all species → | Conserved_site | Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site | Interproscan |
| IPR001678 all species → | Domain | SAM-dependent methyltransferase RsmB-F/NOP2-type domain | Interproscan |
| IPR036974 all species → | Homologous_superfamily | PUA domain superfamily | Interproscan |
| IPR023267 all species → | Family | RNA (C5-cytosine) methyltransferase | Interproscan |
| IPR002478 all species → | Domain | PUA domain | Interproscan |
| IPR029063 all species → | Homologous_superfamily | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Interproscan |
| IPR015947 all species → | Homologous_superfamily | PUA-like superfamily | Interproscan |
| IPR049560 all species → | Domain | SAM-dependent methyltransferase RsmB-F/NOP2-type, catalytic core | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22807 all species → | NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0008168 all species → | Molecular Function | methyltransferase activity | Interproscan |
| GO:0001510 all species → | Biological Process | RNA methylation | Interproscan |
| GO:0008173 all species → | Molecular Function | RNA methyltransferase activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K21971 | NSUN6; methyltransferase NSUN6 | EC:2.1.1.- | Transfer RNA biogenesis | ko03016 | deepkoala |
Genes whose expression across the transcriptome samples of Actinia mediterranea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Actinia mediterranea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
