Gene detail

Detailed information of ENSQPTP00000051123.1 in Actinia mediterranea

Genomic Location: chr13:1146064...1150011
NR annotation: XP_031550464.1, LOW QUALITY PROTEIN: uncharacterized protein LOC116287899 [Actinia tenebrosa]
Species Actinia mediterranea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSQPTT00000061036

ATGTCCATACGCACCGGGTTTTGGCAGGCGTCTCCCCTTTCCTCTCTCTCACCTAGTCTCTTTCGACAGGAATATCAATTCGcgacacaggaatcccaattcaacaaaaaagaaaagaaagacgagAGACGCATGATGAGGAGGCTAAATTCCTCCATAGGTTTCAGTAACTTTGCTGCTggcattttctcttttttcggtgaaaaatctttttttttttttgAAGAAACTGTGTTATTTCTCGAACAGAGTGGAGAAAAGAGCCGATCAACCTGTTGTACTGACAACGATGAAAAATGCTGTGAAAAGGAAGACGAAGGGGAATGTGGATCTACCAAAGTTGAAGCAAGTTGCTGCAAGGATGAAGAAGGAACTTTGTTGCTTACACAATCGAGTGAAGAGCAACCGGCTTCTCAAAGTTCTAGCTCAGCAGTAAAAGCCAAGGGAACCCTTCCTCCACGACACACCACCAAACTACGCGTACAAAACATCTGTTGCGGTTTGGAGGCTGAACTGGTTCAAGAATGCCTAAATCCCTTGCAAGGGGTCGAAAATGTTGCCATTGACGTCATTGGACGAGTGGTGCACGTTCGTCATGACCCCGATGTGACGTCATCCACTGAACTCGTTGAGAGCCTGAACCGAGTTCACCTTGGAGCATCCGTGATGGAAATGGGTGCGCATCACGATAAAGATCACGACAAAGTCCCCTTGCTTCTCAAAATTGGCTTTATCTATGTATTTCTACAAACTTGTCTTTTTATTACCGCTGTTACGGGATTTTTTCTCAAACAGCCATGGTATATGTGGGTCGCTATCGCTGAGATTATCTTTGGAGGTGCTCCTCTATTGAAACGCTCGTTCTTTGCTGTCATAAAACGAAAAATCGACATAAATATTCTAATGATAGTCGCTATGATAGGAACAATGGCTCTTAGTAAATGGATAGAAGGAGCTACTGTAGTCTACGCCTTTGCCTTTGCCCATGCTCTACAAGAATTCTGCATGTTTCGAGTACAGCGGACTATCTCCAGGCTCATACTCAAAAGACCAGAAGTCGCGGTGCTGGTCGAAACGGGAAAAAGTGTACCCATTGAAAGTGTCGCTATAGGAACACTGATAGCAGTAAGGCCAGGAGAACTCATACCTCTTGATGGAGTGGTAGTCAAGGGGAAAGCGGCAGTCGACGAAGGCTCAATCACTGGAGAGTCTTTACCCGTAGAAAAAACGATTTCATCTGAGGTCTACAGCGGCACAGTCAACCAAAATGGCTACATTGAAGTTGAAACTACTTCAGATTCTTCCACTTCGACTGTTTGGAAAATTGCGCAGATGGTTCAAGAAGCACAATCAAGCTCTACAAAAATAGAAGCGACCATTAATCGTTTTGCCAAATACTATACACCACTCGTCGTGGTGGTTGCTGCTCTAGTAGTTGTCGTACCCGCCATTTTGGGTGCTGCAGGTGTTGGCAATTATTTAGAGGAAATCCGAGAATGGGGCCGGAGGGCGTTGGTCATGTTAATCATCGCCTGCCCCTGCGCTCTGGTCATGTCCACCCCGATTGCTGTCGTATGTAGCATTACTGCGGCTGCGCGGAAAGGAGCGCTGATAAAAGGAGGTGAACACCTGGAGACGTTGTCCAAGATTGAGGTACTTGCGTTCGACAAAACTGGAACATTGACAGAAGGGAAATTTCAGGTGATGAATATGGAATGCACTTATGGCGAGAACGAGAGGGATGTCCTACGCTTAGCAGCGGGGTTGGAGAGCAAATCTGTGCATCCTATTTCCGCGGCAATAGTCAACAAATTCTCGGGATGCGTCACAGAGATGGTTAGGAATCAGGTCATTACTCTGCCCAAAGTTACACAATTCAAGATGTACGAAGGAAAAGGAATATCAGGGCTTATTGAAGGTAAACTTGTCCGCGTTGGTAATAAGGAAATGGTTGATCAATGCGGGGCATCTCTAACTGAAGCAATGGCAGAGAAGTATGAGCTGTGGTCAAGCGAGAGTAAGACTGTGGTATTCGTTTGCGTCAATGAAAGATTGTCCCTCATGATAGCTCTAGCTGACGCCATACGCCCCAACACGTCGAACAGCCTCGATTGGCTGAGGAACATCGGTGTTCAGACCTCCATGATCACTGGAGACAACTCACGGACAGCAGAGGCCGTGAGCAGGAACCTTGGACTAGATGAATGCGTCTCTGAGATGAAACCCCATGTCAAACTTGAATGGAttcaagaaaagcaaaaaagtAAGATGGCGTTAGGCTACAATGTCTCACATAATAAATGGCAACGATCAAGTGTTCAACAATTGATGGTGGGGATGGTTGGCGATGGAGTCAACGATGGCCCTGCTCTGGCCGCGGCGAATGTTGGGATGGCTATGGGTGCAGGGGGCACTGCCCTAGCTGTGGAGGCTGCAGACGTTGCATTGATGAGTAACGACCTTGCAAAGATCCCTGAGCTCATCTGTCTTGCTAAGTTCTGCAGCCTGATTGTGAAGCAAAATATCGTGTTCTCTGTACTCTTGAAAATAACTACCGTAATAGTTGCTCTGTGTGGATACCTTCATCTGTGGATGGCTGTAGTAGCCGACGTCTTGGGGTTGTTATTTGTCATTATCAACGGACTGCGTCCTCTGATATGGAAGGCGTCCAAGAAACACACCAAGGGTAACAAGGATATCGAAGTCAATGGAAAAAAGCATCGGTTTTCATACTACGAAAAAAGTATCAAAATCCCGATTCCTAATCTTGAAAGGATAAAAAAATCTTGGAGAGTTGACTTTCCTCAGTATGGACATGCTAAACGAGCGCGAGCTTCTTCGACTCCATAG

Transcript

ENSQPTT00000061036

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A3BF39	Cadmium/zinc-transporting ATPase HMA2 OS=Oryza sativa subsp. japonica OX=39947 GN=HMA2 PE=1 SV=1
Q9SZW4	Cadmium/zinc-transporting ATPase HMA2 OS=Arabidopsis thaliana OX=3702 GN=HMA2 PE=2 SV=1
O64474	Putative cadmium/zinc-transporting ATPase HMA4 OS=Arabidopsis thaliana OX=3702 GN=HMA4 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001634 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00122 all species →	E1-E2_ATPase	E1-E2 ATPase	Family	Interproscan
PF00702 all species →	Hydrolase	haloacid dehalogenase-like hydrolase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR044492 all species →	Domain	P-type ATPase, haloacid dehalogenase domain	Interproscan
IPR023298 all species →	Homologous_superfamily	P-type ATPase, transmembrane domain superfamily	Interproscan
IPR051014 all species →	Family	Cation Transport ATPase Type IB	Interproscan
IPR006121 all species →	Domain	Heavy metal-associated domain, HMA	Interproscan
IPR001757 all species →	Family	P-type ATPase	Interproscan
IPR018303 all species →	PTM	P-type ATPase, phosphorylation site	Interproscan
IPR023299 all species →	Homologous_superfamily	P-type ATPase, cytoplasmic domain N	Interproscan
IPR036163 all species →	Homologous_superfamily	Heavy metal-associated domain superfamily	Interproscan
IPR027256 all species →	Family	P-type ATPase, subfamily IB	Interproscan
IPR023214 all species →	Homologous_superfamily	HAD superfamily	Interproscan
IPR008250 all species →	Homologous_superfamily	P-type ATPase, A domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48085 all species →	CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0005215 all species →	Molecular Function	transporter activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0006812 all species →	Biological Process	monoatomic cation transport	Interproscan
GO:0019829 all species →	Molecular Function	ATPase-coupled monoatomic cation transmembrane transporter activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01534	zntA; Zn2+/Cd2+-exporting ATPase	EC:7.2.2.12 EC:7.2.2.21	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Actinia mediterranea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Actinia mediterranea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →