Genomic Location: chr13:12401795...12403418
NR annotation: XP_031571310.1, grpE protein homolog 1, mitochondrial-like [Actinia tenebrosa]
Species Actinia mediterranea · all data for this species · gene families
| CDS |
| ENSQPTT00000061774 |
| Transcript |
| ENSQPTT00000061774 |
| Protein |
| ENSQPTP00000051815.1 |
| UniProt accession | Description |
|---|---|
| Q9HAV7 | GrpE protein homolog 1, mitochondrial OS=Homo sapiens OX=9606 GN=GRPEL1 PE=1 SV=2 |
| Q5RA81 | GrpE protein homolog 1, mitochondrial OS=Pongo abelii OX=9601 GN=GRPEL1 PE=2 SV=1 |
| P97576 | GrpE protein homolog 1, mitochondrial OS=Rattus norvegicus OX=10116 GN=Grpel1 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008233 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01025 all species → | GrpE | GrpE | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000740 all species → | Family | GrpE nucleotide exchange factor | Interproscan |
| IPR013805 all species → | Homologous_superfamily | GrpE nucleotide exchange factor, coiled-coil | Interproscan |
| IPR009012 all species → | Homologous_superfamily | GrpE nucleotide exchange factor, head | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR21237 all species → | GRPE PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000774 all species → | Molecular Function | adenyl-nucleotide exchange factor activity | Interproscan |
| GO:0006457 all species → | Biological Process | protein folding | Interproscan |
| GO:0042803 all species → | Molecular Function | protein homodimerization activity | Interproscan |
| GO:0051087 all species → | Molecular Function | protein-folding chaperone binding | Interproscan |
| GO:0001405 all species → | Cellular Component | PAM complex, Tim23 associated import motor | Interproscan |
| GO:0030150 all species → | Biological Process | protein import into mitochondrial matrix | Interproscan |
| GO:0051082 all species → | Molecular Function | unfolded protein binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03687 | GRPE; molecular chaperone GrpE | - | Mitochondrial biogenesis | ko03029 | deepkoala |
Genes whose expression across the transcriptome samples of Actinia mediterranea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Actinia mediterranea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
