Gene detail

Detailed information of ENSQPTP00000052741.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031551993.1, ubiquitin carboxyl-terminal hydrolase 5-like [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

ENSQPTT00000062794

ATGGACCGCATAGATGTAGGTAGCATTCGTGTGCCTGGAGGCGGAGATAAGGTTTATAAGGATGAGTGTATGTACTGTTTTGATTCGCCGGAATCAGACGATGGATTATACGTATGTATGTCCACATTCCTGGGTTTCTGTAAAAGACATATCAAACTACATATATCAAAAACAGGAAGAAAGACCTTTCTGCATCTAAAGAAAATTCCAAAACAGGCAAACGAGGAAATCTCCAGAGATACACCCCCAAAAAAGAAGCCTACAAGGCTTGCTATAGGGGTGGAAGGAGGCTTTGATGCTGAAGACAAGAAGGTTGAATTTGAAGAAGTCAACTCAGTGGCAGTATTTGGTGATGAAGAAGAACCAGCAGTCATTGCATTACCAAACCCTGATCTACCACTACAGGTGCAATTGTCCATTGCTGGCATTATCACTGCTGACACATCTGCGTACAAGGAAGAAGTTGCTGCTTGGGAtggagagaaaagaaaagtctCAAAGTATGCAGACTCACTGGTTCAGTTAGATAATGGTGTGAAAATACCACCAAGTGGATGGAAGTGTGCTATGTGTGACAAGACAGATAATCTGTGGTTAAACCTCACAGATGGCTCGATTCTATGTGGACGCAGATACTTTGATGGCAGTGGAGGCAACAACCATGCACTAGAAGCATATCAACAAAAAAAGTACCCTCTTGCCGTGAAGCTAGGTACCATTACCCCTGATGGAGCAGATGTATTCTCCTACGATGAAGATGAAATGGTAGAAGATCCAAACTTGGCCAAACACCTGGCTCATTTTGGCATCAACATCACACAGATGCAAAAGACAGATAAGACAATGGCTGAACTGGAAATTGATATCAACATGCGGATAAGAGAATGGGACGTCATTCAGGAATCAGGAAAGAAGCTCATTCCTCTATATGGCCCTGGATACACTGGCCTAAAGAACCTTGGAAACACGTGTTACATGAATTCAGTCATGCAAGTGTTATTTTCTATCACAGAACTCCAGCAAAGATATGGAGCCACAAAGGAAGAGACTTTTGCTAACTCACCAAGTGATCCATCTGGAGATTTTAACACACAAAtGGTGAAGCTAGCAGATGGTATTCTGTCTGGACGATACTCACAACCACCAAAAGAACCCAAGAAAACTGATGATTCACAGGGAGAGCAAACAGTGgAGCAAGATGGAATATCCCCTCACATGTTCAaggctctgattggtcgagggCATCCAGAGTTTTCCACCAATCGGCAGCAAGATGCACAAGAGTTTTTTGCATATCTGATCGAGAATATTGACAGAGCAGAGAGAACCAACAAGGGGCTGGTAAATCCAGTGGATTCATTTAGATATAAAGTTGAAGAACGAATCCAATGTATGGAGTCCAAGAAAGTCCGTTACACAAGCAGAGAAGATAACATGCTGTCGTTAGCAATACCAATGGACGCAGTGTTAAACAAAGACGAAGTAGACGCGTACGAAATTAAGCGTAAAGAGGcagatgaaaagaaagaacggCTGGATGCCAGCGTCATGGTCAGACCCAAGGTGTCCATGTCCTCATGTCTCGAGAACCTCTCCACGCCTGAAACAATTCAAGATTTTTACAGTCCTGCAATAAAGGCGAAAACTACAGCTTTGAAaaccactcgcttcctaacttttCCAGATTATCTAATGATCCAAATCAAAAAGTTCACTCTCGGTGAAGATTGGGTTCCCAAAAAACTAGATGTTGAGCTAGAGGTTTTGGAGGAGCTTGACTTGACTCTACTGAAGGGAACAGGACTCCAGCCGGAGGAGGAAGAACTCCCTGAAGAGGAAGCTCCAGCTTCTGTAGAGCCAGACGTCGATGAGGGAATTGTCCAACAGCTCGTAGACATGGGCTTTGATCGACAGGGATGCAGAAAAGCAGCTCACTTCACAAACAATCAAGGTGTTGAGGCTGCTATGAACTGGGTGTTAGAGCATATGGGTGACCCAGACTTTGCAGAACCTTTGCGGCTACCAGGTTCAAAGCCTTCTGCTGCTAACATCAATGAAGAATCAGTAGCTATGGTAATGTCAATGGGATTTAGTAGAGAACAGGCTGTCAAGGCTCTGAAAGCAACGGATAACAACCTTGAACGGGCAGCGGACTGGATATTTAGCCATGCGGACGAACTAGATGctatggaagtagaaggagcAGAAGAGAATGCTACCAAGTTTAAAGACGGACCTGGAAAGTATCGTTTAATGGCCTTTATTAGTCACATGGGGACGTCTACAATGTGCGGACACTACGTCTGTCATATTCTTAAAGATGGAAGATGGGTTATCTTTAACGACAGAAAGGTTGCACAATCAGAAACACCTCCAAAGGAGCTTGCCTATTTGTACCTTTATAAAAGGATGACTTAG

Transcript

ENSQPTT00000062794

CTGAAGTGAGAATAAGAGGCTAAAAAGAAAGTttacattaatattatttaaaataattataaagctGTAGATCTCTGAGATTATGGACCGCATAGATGTAGGTAGCATTCGTGTGCCTGGAGGCGGAGATAAGGTTTATAAGGATGAGTGTATGTACTGTTTTGATTCGCCGGAATCAGACGATGGATTATACGTATGTATGTCCACATTCCTGGGTTTCTGTAAAAGACATATCAAACTACATATATCAAAAACAGGAAGAAAGACCTTTCTGCATCTAAAGAAAATTCCAAAACAGGCAAACGAGGAAATCTCCAGAGATACACCCCCAAAAAAGAAGCCTACAAGGCTTGCTATAGGGGTGGAAGGAGGCTTTGATGCTGAAGACAAGAAGGTTGAATTTGAAGAAGTCAACTCAGTGGCAGTATTTGGTGATGAAGAAGAACCAGCAGTCATTGCATTACCAAACCCTGATCTACCACTACAGGTGCAATTGTCCATTGCTGGCATTATCACTGCTGACACATCTGCGTACAAGGAAGAAGTTGCTGCTTGGGAtggagagaaaagaaaagtctCAAAGTATGCAGACTCACTGGTTCAGTTAGATAATGGTGTGAAAATACCACCAAGTGGATGGAAGTGTGCTATGTGTGACAAGACAGATAATCTGTGGTTAAACCTCACAGATGGCTCGATTCTATGTGGACGCAGATACTTTGATGGCAGTGGAGGCAACAACCATGCACTAGAAGCATATCAACAAAAAAAGTACCCTCTTGCCGTGAAGCTAGGTACCATTACCCCTGATGGAGCAGATGTATTCTCCTACGATGAAGATGAAATGGTAGAAGATCCAAACTTGGCCAAACACCTGGCTCATTTTGGCATCAACATCACACAGATGCAAAAGACAGATAAGACAATGGCTGAACTGGAAATTGATATCAACATGCGGATAAGAGAATGGGACGTCATTCAGGAATCAGGAAAGAAGCTCATTCCTCTATATGGCCCTGGATACACTGGCCTAAAGAACCTTGGAAACACGTGTTACATGAATTCAGTCATGCAAGTGTTATTTTCTATCACAGAACTCCAGCAAAGATATGGAGCCACAAAGGAAGAGACTTTTGCTAACTCACCAAGTGATCCATCTGGAGATTTTAACACACAAAtGGTGAAGCTAGCAGATGGTATTCTGTCTGGACGATACTCACAACCACCAAAAGAACCCAAGAAAACTGATGATTCACAGGGAGAGCAAACAGTGgAGCAAGATGGAATATCCCCTCACATGTTCAaggctctgattggtcgagggCATCCAGAGTTTTCCACCAATCGGCAGCAAGATGCACAAGAGTTTTTTGCATATCTGATCGAGAATATTGACAGAGCAGAGAGAACCAACAAGGGGCTGGTAAATCCAGTGGATTCATTTAGATATAAAGTTGAAGAACGAATCCAATGTATGGAGTCCAAGAAAGTCCGTTACACAAGCAGAGAAGATAACATGCTGTCGTTAGCAATACCAATGGACGCAGTGTTAAACAAAGACGAAGTAGACGCGTACGAAATTAAGCGTAAAGAGGcagatgaaaagaaagaacggCTGGATGCCAGCGTCATGGTCAGACCCAAGGTGTCCATGTCCTCATGTCTCGAGAACCTCTCCACGCCTGAAACAATTCAAGATTTTTACAGTCCTGCAATAAAGGCGAAAACTACAGCTTTGAAaaccactcgcttcctaacttttCCAGATTATCTAATGATCCAAATCAAAAAGTTCACTCTCGGTGAAGATTGGGTTCCCAAAAAACTAGATGTTGAGCTAGAGGTTTTGGAGGAGCTTGACTTGACTCTACTGAAGGGAACAGGACTCCAGCCGGAGGAGGAAGAACTCCCTGAAGAGGAAGCTCCAGCTTCTGTAGAGCCAGACGTCGATGAGGGAATTGTCCAACAGCTCGTAGACATGGGCTTTGATCGACAGGGATGCAGAAAAGCAGCTCACTTCACAAACAATCAAGGTGTTGAGGCTGCTATGAACTGGGTGTTAGAGCATATGGGTGACCCAGACTTTGCAGAACCTTTGCGGCTACCAGGTTCAAAGCCTTCTGCTGCTAACATCAATGAAGAATCAGTAGCTATGGTAATGTCAATGGGATTTAGTAGAGAACAGGCTGTCAAGGCTCTGAAAGCAACGGATAACAACCTTGAACGGGCAGCGGACTGGATATTTAGCCATGCGGACGAACTAGATGctatggaagtagaaggagcAGAAGAGAATGCTACCAAGTTTAAAGACGGACCTGGAAAGTATCGTTTAATGGCCTTTATTAGTCACATGGGGACGTCTACAATGTGCGGACACTACGTCTGTCATATTCTTAAAGATGGAAGATGGGTTATCTTTAACGACAGAAAGGTTGCACAATCAGAAACACCTCCAAAGGAGCTTGCCTATTTGTACCTTTATAAAAGGATGACTTAGCTAGactattctttcttttgtgtctgTGTCTTGTAATATTTATTGTTACTTAAAGTAGACATAATGGGAAAAGaagtaagaaaaattaaagtaaGAATAGTAAGAAGTAAAAAGAAGGTAAGAATAAAGAtaaggaaacaaaagaaaacaaagaaaacacaaacaagaaagaaattatttcAGGTTGTTAATTGGATCacttttttgattggttcatttGTCGActattttgattggtttagcTTTCCTgtaatttgattggttcacaGTAGAAGCTACTATTTGGATTGGATGGCCTTTCCTGtgatttgattggttgagagtTTAAGGATGATATCAGAAattttttgattggatgagcttTCCTGTCATTTTATTGGTTCTGAGATGTGAAAGCCGTTTGGAAATCTTACGTACCGTGCTGTAACTGTGTCATGATGCAGAATCTtaaatttaaacattttgtGACTTCGAATCTAAATGAACATTTAAGAAAATACAGGGCTTGGcaccgtcacgtgatggcagtcatgacaggaggcaggaacaagaaataatttaatttcCCAGGAGagaaagactctattgttgtgcctcatgtcatggctgccatcacgtgatggtgccaAGCCTCTAGAAATAATTTTTGCACTGAATAAATTGTTAAGGTCTATTTGAACTTgctttaaatgtttttaagaAAATGGGGTGCTTGTGGAATTAgttcgagcatgcgcagtaggaTTGACATAGCTGCCTAGCAAAAATCCTCCCTACTGTAGAAATCGTTTAGCTTTGCCTTAACTCTTACTTCGATCCATGCAAAAGAAATATagtgaaaaattattttaaattactgacAAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P56399	Ubiquitin carboxyl-terminal hydrolase 5 OS=Mus musculus OX=10090 GN=Usp5 PE=1 SV=1
P45974	Ubiquitin carboxyl-terminal hydrolase 5 OS=Homo sapiens OX=9606 GN=USP5 PE=1 SV=2
Q5R407	Ubiquitin carboxyl-terminal hydrolase 5 OS=Pongo abelii OX=9601 GN=UBP5 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003261 (this species only)
Ubiquitin family	UBD\|Alpha-Helix\|UBA · all ubiquitin genes in this species
Ubiquitin family	DUB\|USP\|USP · all ubiquitin genes in this species
Ubiquitin family	UBD\|ZnF\|ZnF_UBP · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17807 all species →	zf-UBP_var	Variant UBP zinc finger	Domain	Interproscan
PF02148 all species →	zf-UBP	Zn-finger in ubiquitin-hydrolases and other protein	Domain	Interproscan
PF00443 all species →	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan
PF00627 all species →	UBA	UBA/TS-N domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041432 all species →	Domain	Ubiquitinyl hydrolase, variant UBP zinc finger	Interproscan
IPR016652 all species →	Family	Ubiquitinyl hydrolase	Interproscan
IPR018200 all species →	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR015940 all species →	Domain	Ubiquitin-associated domain	Interproscan
IPR001607 all species →	Domain	Zinc finger, UBP-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR028889 all species →	Domain	Ubiquitin specific protease domain	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR001394 all species →	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR050185 all species →	Family	Ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR009060 all species →	Homologous_superfamily	UBA-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21646 all species →	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579 all species →	Biological Process	protein deubiquitination	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11836	USP5_13, UBP14; ubiquitin carboxyl-terminal hydrolase 5/13	EC:3.4.19.12	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.