Gene detail

Detailed information of ENSQPTP00000053341.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031571824.1, RNA binding protein fox-1 homolog 3-like isoform X1 [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

Transcript

ENSQPTT00000063480

CATCCGGGCCTTATTCAGAAAAGATAATATGCACTGAATGAATTAGTCGtcgctgattggctgatcaattgattctttgtttgtatTCATTTTGAAAGGTTTCCAGTCACGCGTTCCCGTTGACACTTCGCAAGATCAGATGCATCGCTAGCTACAGTTTATAGTAATTTCTTCGAAAGGGATTATTCAATGAGCGAAAAGATAGACGGAACTGAACCAGCCAAGACTAAAGATgccgaagaaaaagaaaagactgAAAAGCCAGATGAGTCTAAGGAGAACAAGTTGGAGAAAGAAGAGCCTTTGACGAATGGACTTCAATATTCACCACAGCAAGGAATGCAAACTTACAGTCCTGTATCTTCACAGCTACAGCCAATAGTCCAAGACGCAACACAACAACttatacaacaacaacaacaacagcagcagcagcagcagcaacaacaacaggtTGCTGTAGCCGCTACTTCGCCCTCAGCGAGCGATGAAGCCGGACACAAACGACTCCATGTTACAAATATCCCGTTTAGATTCAGAGATAATGATCTCAAGCAAATGTTTGGGCAATTTGGAACTGTTGTAGATGTTGAAATAATTTACAATGAACGGGGTTCCAAGGGATTTGGATTTGTGACGTTCAGTAATGGTGAAGATGCAAACAGAGCGCGGGAAAAATTAAATGGGACGATCGTGGATGGCAGAAAAGTGGAGGTCAACAATGCCACTCCTCGACCGCTTGCCAAAAAAAGCCCGTCTCCCACGCGAGGACCATATAGCAACGGTCTTTCACGTAGTGTGAGAGGAACGAGAAGAGGAATATTACCGATTACCAAGTTTACTACCAGGGCTATTCCTCAGTTAGCAATCCCTGCTGGGTATGAGGCGGCTGCTTATCCTGGTTTATACGAAGCATACGCCGATCAGTTATGGCAGACAGCGGCTTATCTCAGAAGACCCACGTGCGCCGCTTACCCAagTTATGAAATCGCATACACGACAGGATATCCGGCAACAGCAGCATACGCCGCTACTCCAGCAGCCTACAGAACACCGATAGctgcccctcccccctcagtAGCCTACACTACAGGATTCAGATATGCTCCTTACTGATTGatatagacagacagacaaacacacacacgaTAACTCACTCATCCATTCAGCAATCCTACGTAATTTTAAATAGACTAACgtttgaaaaatatcatatgtaTCTATATTTACGGTAGGTTTGTGGATCAAACAGAAATGAGCCCGCGAAGAAAGGGCGTGCGTCGTTGCGCCGTCCCTTCGTTAGCAAAGCTCGCTCTCTAAAGCCTGGTTCTCCCTAGCATCGGAATCGCAAGCAACGGACGCAGACTCAGTAGTGTATGCTGCTCATTAACagtgcttttcttttttaacatGTGATACTTAGTCTCTGATTCCGATTCCCACGCTAGTGTAAACCATGCTTAATATTCTGTTGAAGAaggaagtttttaaaaaaaaatatcttgatCATTATTATCGTActaaattttttattgtgcATTTCGGGGgttcctttctctctttctctctcggAGTGTGATTCATGACCATAATGACATACCTGTATAAGCCTCGCATAACATAGTAATACAAcagagcataaataagaaagggaaacttcttaataacgcgcgcgccatgtaaattcccggttgggctatttttagaaaccGGATGGAGTTTAAATTtcgccttaccctactcccgtgCGTAATCAACTTGCtcgcgcgcgctctttccgtttgtTGTTTTGAACGTCGTTTTGCACCTGCTCGTTTTGATCACTAGAAACGAAACGGAAAGAgcgaaatttaaactgcatccggttACTAAAGGAAGCCCAACCAggaatttacatggcgcgctctttattaagaagtttccctttcttatttatgctctcttgagTAATACCATTTCTTAGCACGTCTATAGAGGTAGTATAGATTCAATGTATAGGCCCATTTTCTTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q95KI0	RNA binding protein fox-1 homolog 1 OS=Macaca fascicularis OX=9541 GN=RBFOX1 PE=2 SV=1
Q5NVN8	RNA binding protein fox-1 homolog 1 OS=Pongo abelii OX=9601 GN=RBFOX1 PE=2 SV=1
Q9NWB1	RNA binding protein fox-1 homolog 1 OS=Homo sapiens OX=9606 GN=RBFOX1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004522 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR034237 all species →	Domain	FOX1, RNA recognition motif	Interproscan
IPR047131 all species →	Family	RNA binding protein fox-1 homolog 1-like	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR003954 all species →	Domain	RNA recognition motif domain, eukaryote	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15597 all species →	ATAXIN 2-BINDING PROTEIN 1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0000381 all species →	Biological Process	regulation of alternative mRNA splicing, via spliceosome	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007399 all species →	Biological Process	nervous system development	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14946	RBFOX, FOX; RNA binding protein fox-1	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.