Gene detail

Detailed information of ENSQPTP00000053708.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031567442.1, arginine/serine-rich protein PNISR-like isoform X2 [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

ENSQPTT00000063899

ATGTGGGCCAACGGAGACCAATCTAATGCTCAATGGTGGCCAATGCATTATGGTTATCAATATTCTAATCCAAGTCAAGatgCAAGTGCAGACTGGGCCACCAGAGCAGCACTATGGGCTCAGCAACGACAAGCACAAGAAGAGATGGCCAAACAACACCAACAGTACTATTCCACCATGCAGAACCAACCTCAACCAGATGGAAGCAGACTGCCACCTGAGAAACCTCCTTTACCGAGCGATGGTACAGACCATGCATTCACGCAAAACAGCTCTGTTCCACCCCTACCCCCAGGGGAATCAGATCTGCCACCACCGATACCAGAAGCTGAGGGCGACAACCTCGAAACTGTTGCTATGGAGGACGAGCCCTTAGATACGCCAGTGCTTGAACAGGAAATAGCTGTCACAAGACTAGACTATAACCATGGGCAACCTGTTCCTCTACCTGAAGTTGCTCCCCCTCCTCCATTGCCGGGTATGCAGACATTCGATCATAACCATGGATTCACGCCCGCTGCTGGTGCACCAGCCCCTGCTTTTGTTCCTGCACAGCGCTTTGACTATGGACATCAGAGTGCAAAGTATGACCACCAGAAAGGAAGTCATCCGTCGTCTTCACAGTGGTATGATTATAACCATGCACATGGGGCCGAACATCATCAGGAGTATGAACCAGAGAGGCGCCATTCACGGCATAGTGGCAGGCACGAGCCTCCGCAGCCACATACCCCTCCTGCTATAGATTTTGCAACAATGTCAGAGGTCAAGAAGAAAGCACTGCCGCTTTGGATCCGTGAAGGCCTGGAGAAGATGGAACGagaaaagcaaaagaaacaaaaacaagaattaaaGAAATCCCTGAATTCTTCAAATTCTTCAAATTCTTCTTTGCCTAACATATCTGGATACGAGCACGGAAAGGTGGAATCCCCTGTACCATCACCAGAGCAGCCACAATCTGATGAGAAGCCTGAGAGCAGTGACaaggaggaagaggaggaggagaaagaaataaagaaagagaagGAAGCAACACCTGAGCAACCAAgaaagcatcatcatcatcatcatgttaaGCGCTCACACTCAAGGTCTTTATCACCACAAAAACATGATTCATCTGATGATGAAGTAGACAATAGAAGTGAATCAGAAAAACAGCAAGACATGCTTCTAAAAATGCGTAAAATGATGACTGAGGTTCTTTTAACTGTCACTAACGAAGAACTTCAGAATATTGCCAAAGAGGCATATAACGATGCACTATTAGCTGCAAATCGTCAACTTCGAAGCTCTGGTGGCCTGGATCTCTTAAAGCAGGGTGGTACTTTAGGTCTCGGAGACTACGGTTCTGACTCTGAATCAGACAGCGATGAAGATCAACCACAACAAAAGACCTCAGAACGACTCCATCCTGTCTATGAGAAAGAAGAGTATGACAATGCTAATAGACAATCTCGTAGTCGCTctccaaggaaaacaaactCCAACGACAGTGACACAAATCGGTCCAGATCTGGCTCACGGGATTCAAACCCCAAGCATCACGAGCCAGGATCGACTGTCACCTCTGAGGAGGAGAGCGATATCTCTGGATCTGTGTCAAGCAAAAAGAAGAACCGACGCTCGAAACATCGACGCAAACATCGAAGCTCAAGTACTTCCCCCAAACGACGCTCAAAACATAAACATCGACGCAGTAGGTCGAGAAGCAAAACCCCCAAAAAACGAAAGAGCAGCAAGAAGGACCGCAGTAGATCCAGAAGCTTGAGTGAATCCAGGAGCTCACGGAGGTCAAAGAAATACTCTCCAAGTCGTAGCAGATCCCCTAGTGAACACGGAAAACATAGGAAGAGTTCTCGTAGTTCTCGTAGTAGATCTCCGAAGGATGAGAAGCATAAGAGATCTCAAAGTTATAGTAGGTCCCCTAGTGAAAGGAAGCACAGAAAATCTTCTCGAAGCCGCAGTCGATCCCCAAGCGAACGAAGACACAGGAAAAACACGCGCAGTCGCAGTAGGTCCCCAAGACACCGAAGAAAGAAAAGTCGCAGTAGATCCCCAAGGAAGAGCCGTAGGCGCCGCAGTAGAAGCACGTCTTCAGACCATTACAGGGAGGGTAAGAGAGGAAGCGATAGAAGATCACGATCCAGATCAAGGTCTTCAACTCCAAGACGCAAGAGACGTTAG

Transcript

ENSQPTT00000063899

CAGAATGCAAATAAGGCGTGGGTAGGCCTTTGGGCTTTGATGAATTATGACACCCCCCTGTAAGCCATGTgtaaaaacaaccaaaaatgAAGGGAGAAGTCTGCCAAAACAGCTTCATTTTGACCCGATTTAATCCGATTTAAAGACAAAGTAGCACACAGTCAAAGGTACAAGGGTTTCTTTAGTGAAATATCACTCCTAAGCTAGCAGCTAGTTTGACCATGTGGGCCAACGGAGACCAATCTAATGCTCAATGGTGGCCAATGCATTATGGTTATCAATATTCTAATCCAAGTCAAGatgCAAGTGCAGACTGGGCCACCAGAGCAGCACTATGGGCTCAGCAACGACAAGCACAAGAAGAGATGGCCAAACAACACCAACAGTACTATTCCACCATGCAGAACCAACCTCAACCAGATGGAAGCAGACTGCCACCTGAGAAACCTCCTTTACCGAGCGATGGTACAGACCATGCATTCACGCAAAACAGCTCTGTTCCACCCCTACCCCCAGGGGAATCAGATCTGCCACCACCGATACCAGAAGCTGAGGGCGACAACCTCGAAACTGTTGCTATGGAGGACGAGCCCTTAGATACGCCAGTGCTTGAACAGGAAATAGCTGTCACAAGACTAGACTATAACCATGGGCAACCTGTTCCTCTACCTGAAGTTGCTCCCCCTCCTCCATTGCCGGGTATGCAGACATTCGATCATAACCATGGATTCACGCCCGCTGCTGGTGCACCAGCCCCTGCTTTTGTTCCTGCACAGCGCTTTGACTATGGACATCAGAGTGCAAAGTATGACCACCAGAAAGGAAGTCATCCGTCGTCTTCACAGTGGTATGATTATAACCATGCACATGGGGCCGAACATCATCAGGAGTATGAACCAGAGAGGCGCCATTCACGGCATAGTGGCAGGCACGAGCCTCCGCAGCCACATACCCCTCCTGCTATAGATTTTGCAACAATGTCAGAGGTCAAGAAGAAAGCACTGCCGCTTTGGATCCGTGAAGGCCTGGAGAAGATGGAACGagaaaagcaaaagaaacaaaaacaagaattaaaGAAATCCCTGAATTCTTCAAATTCTTCAAATTCTTCTTTGCCTAACATATCTGGATACGAGCACGGAAAGGTGGAATCCCCTGTACCATCACCAGAGCAGCCACAATCTGATGAGAAGCCTGAGAGCAGTGACaaggaggaagaggaggaggagaaagaaataaagaaagagaagGAAGCAACACCTGAGCAACCAAgaaagcatcatcatcatcatcatgttaaGCGCTCACACTCAAGGTCTTTATCACCACAAAAACATGATTCATCTGATGATGAAGTAGACAATAGAAGTGAATCAGAAAAACAGCAAGACATGCTTCTAAAAATGCGTAAAATGATGACTGAGGTTCTTTTAACTGTCACTAACGAAGAACTTCAGAATATTGCCAAAGAGGCATATAACGATGCACTATTAGCTGCAAATCGTCAACTTCGAAGCTCTGGTGGCCTGGATCTCTTAAAGCAGGGTGGTACTTTAGGTCTCGGAGACTACGGTTCTGACTCTGAATCAGACAGCGATGAAGATCAACCACAACAAAAGACCTCAGAACGACTCCATCCTGTCTATGAGAAAGAAGAGTATGACAATGCTAATAGACAATCTCGTAGTCGCTctccaaggaaaacaaactCCAACGACAGTGACACAAATCGGTCCAGATCTGGCTCACGGGATTCAAACCCCAAGCATCACGAGCCAGGATCGACTGTCACCTCTGAGGAGGAGAGCGATATCTCTGGATCTGTGTCAAGCAAAAAGAAGAACCGACGCTCGAAACATCGACGCAAACATCGAAGCTCAAGTACTTCCCCCAAACGACGCTCAAAACATAAACATCGACGCAGTAGGTCGAGAAGCAAAACCCCCAAAAAACGAAAGAGCAGCAAGAAGGACCGCAGTAGATCCAGAAGCTTGAGTGAATCCAGGAGCTCACGGAGGTCAAAGAAATACTCTCCAAGTCGTAGCAGATCCCCTAGTGAACACGGAAAACATAGGAAGAGTTCTCGTAGTTCTCGTAGTAGATCTCCGAAGGATGAGAAGCATAAGAGATCTCAAAGTTATAGTAGGTCCCCTAGTGAAAGGAAGCACAGAAAATCTTCTCGAAGCCGCAGTCGATCCCCAAGCGAACGAAGACACAGGAAAAACACGCGCAGTCGCAGTAGGTCCCCAAGACACCGAAGAAAGAAAAGTCGCAGTAGATCCCCAAGGAAGAGCCGTAGGCGCCGCAGTAGAAGCACGTCTTCAGACCATTACAGGGAGGGTAAGAGAGGAAGCGATAGAAGATCACGATCCAGATCAAGGTCTTCAACTCCAAGACGCAAGAGACGTTAGTAGACAGTAATACTGAATCAATAATGCTTTGCTGTCTGGAGGCTTGCTCGCTACTGAAGTAAACATTACACCTGTATTAGTTCTGATGTTGATGAAAAAACTAAGTTGAGTTGCAGTAGTcctcttcacagttccctgcgtcatcttgaaaggtagccgtgcctttgcatcgaagcgagacgaacggtaaccttgcaatgatagagaccttttttaacaccttgaacaatatttacatatctctatcattgcgagctcaccattcgtctcgcgtcaatgcaaaggcacagctacctttcaagatggcgcagggaactgtgaaggggtctattgcAGTGTATCGTGGGGCTGAtttaggggacatatttccaagattgCATCTATTTTCACAATAACGACCTAGCAATCCACGACAATTCCAACTCAATGCACAAAGAGACCTTAGTGGGACCTTTACGCTAAGGGGATGGGAGAAATTGTGATTAAAGatcgccatgttggatgataaaGAAACCTTAGAGGGATCTTACGCTAAGGTGATTGGAGAGATTGTGATTAAAGATCACTAGGAAATTTTCATTGCAGTGCACTAACACGATGAACattttcaaagaaataaatagaggatattacatgggcgcgcggagatacgaaatttatcttcgagtgttgaaaaaatcttgagagattttcaacacgagaagataaattgcgtatctccaagcgcacatgtaatattctgtttattatataattatcaatgaagtatgttttggctttttcaggcaattctttccgtgtatttttgaatagccatcgcaatggtgttattttcacacgtgaaaataacatgttattttcacgtgtgaagatatcaatttttcgaaacagagaaaaatagatatttcataggtaattatataataacttGATATATCAAACAAAGGAAATTACCAGTATGTTGCCTCC

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005291 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15996 all species →	PNISR	Arginine/serine-rich protein PNISR	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031937 all species →	Family	PNN-interacting serine/arginine-rich protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31518 all species →	ARGININE/SERINE-RICH PROTEIN PNISR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0016607 all species →	Cellular Component	nuclear speck	Interproscan
GO:0048786 all species →	Cellular Component	presynaptic active zone	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13170	PNISR, SFRS18; arginine/serine-rich protein PNISR	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.