Gene detail

Detailed information of ENSQPTP00000053929.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031575282.1, E3 ubiquitin-protein ligase RBBP6-like [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

ENSQPTT00000064147

ATGTCTTGTATACATTATAAGTTTCGGAGTAGTTTGGAGTATGATACGATCACGTTTGATGGCTTGGCAATCTCTCTTGCCGACCTCAAAAAATCCATTATGGCGCAGAAAAAATTCGCTAAGGTCACAGACTTCGACTTGGAAGTGACGAACGCACAGACTAAAGAAGAGTATAAAGATGAAAATATGCAGATTCCTAAAAACTCTTCTGTAATAGTTCGACGTATTCCTACAGGAACTCGAAGCAAAGCACAGTTAGCAGCGGATAGGGCAGACCCTTATGCAAGTGGATTACCCAAAACAGTACGTACTAGTCAGAATAGATTGTTTTATActtctactactactactacttctAATCAAGTCAAGAAAAGTGATCTTCAAGAACTACAAACTTCTGTTTCCATTAAACAGAACAAGGTGGTTGACTTGGTGAGCTCAGATGCTTCTGAAGATGACAAGTTGAAAGCAATGATGTCACAGGCTGGAGAAGACTGGCAACCAAACCAGTATGTTAGAGGGCGTGGTAGGGGATATAATCCATCAGGACCTCTGCCTCCTAATTATGTTTGCTATAGATGTGGGAAACCTGGCCACTTTATTAGAAACTGCCCTACTAATGGGGTGAAGCGAACTATTGGAATCCCAAGAACTTTTGGTGATGATCAAGATAGTGGTACAACAGAGGATTCAAACAAAGAGTCCAAAAAGGAATCTTCAGAACCAACCAAAACCTTGGTCCCTATACCAGAGCTAGATACTTCTAAAAAGGATCGTAAAGTGCCGTCGGAGCTGAAATGCCCTATGTGTAAAAACTTGCTGAGTGATGCTGTTCTTATTCCCTGTTGTGGCACCAGCTATTGTGAtgaatGTATTCGTACCTATCTACTTGAAAATGAGCAAGTGTGTCCAACATGTGGCGCTGAGGATGTTTCTCCTGATTCCTTGATTATCAATAAGCAGCTCAGACAGGCTGTGAATAACTTCCGTAATGCCAGACCAGCCAGCCCATTTGTTAACAGTACGACAGATAGTCCAACACCAAGCATTGCTGCCGTCGACAAACCAGCACCCAGTAGCACTGTTgataaaccaatcacaagtAGCACAATTGATAAAACAGCACCCAATACCGCCGTCCCAGAAACTAAACCCCAGTCAGTTAAACCTGAAGTGAATTCTCCAGAAACAAgTGATAAAGACAAATCTGAAGAAAAGGTTTCAAGCACAACTTCAGAAATTCCCCCAAAAGATATATCTGAAGTAAAGGAGgaggaagtaaagaagaaagaaggatCTCCTCTGcctGTATTGAAAACAGAAGTCAGTTCTCCGAGAAGAGAACCAGAGGATCATCGAGATCATCGACTTCCTGCAAGAGAACATCTTAGAGCAGAACCAGGACCTGTTGGACCACATGCTGGTCAACATCCTGGTCAACATCCTGGTCAACATCCTGGCCAACATCCTGGTTATGGTCTTCAGGATCACCCAATTCACAGGGGACCACCTACCCATGGACCTGGTGTTGGTCATCCAATGGTAAAACCAATGATTCGTCGTAATATTCCACCAGACGGTGCCCTCCTTGTACCCACCATAAGGGTTCCTCGTCCACTTCTTGTTCAACCACACCCAGGCCCACTCATGGCACAACCAAGGTTTATAGGCTCTGCAGCTCTGGGTTTACACCCTGTTGCAGCACATCCTGGCATTGTGCAACCTCTACTGGGAGCACCCATTCCTTTTGGTGTCAATCCTCCTGGGTTCCGCCCATTTGAAAACCCTAGACATGTTGAAGGTCTTCCACCAATGTCTGAGGAAGAGTTTTATCGTTATCAAAAAAAGATGAAACTGAGgactaaaagaaaacacagagaaaaagaaCCAGGTGACAGACATTCTAGGCGGGAAAAGTCATCCAACCGTAACCAACCTGGCAACTTTGATGATGAGCTTTCACAGTATAAAGCTTTACAAAGACACCGTACAAGACGAAGATCACGTTCAAGATCATATTCCCGCTCTCCTTCCAGAACTCACTCAAATTCCCGTTCATTTTCCCGTTCCTTGTCACAATCATCACAGAGTTTGTCGAAATCTCCCACCCCAGAAGACTGGGATAGGTCTCGTACTCCTTCTCCCGTCCCCTCTCCCGTAAAATCAGGATCAAAGTCTCCGGTccaaaatgaagaaaagaaaaccaaacagaaaaagagaaaaaagcatCATAAACACAAGCACTCCAAGAAACAGAAACCTTTAGAAACTGAGAATGGTGAAAATGAAGTTAAAGAAAAGGGAGAAAAGGAGAAAACTGAGAAGAGGAAATCAAAGTCAAAGAAAAAAtccaaagacaaagaaaagagCTCTAAAAGTAAGAGGAAATCTAAGGAAAATACAGAGAAATCAGAAAAAGTAAATTCTGAGGAATCTGTGACGGAACTACATGAAAGCGAACATTCTGGAAGAAAGAAATCTAAGGACACAACAGAGAACTCAGGAAAAGCAAATTCTGAGGAGTCGGCAACAGAGGTGAATGAAAGTGAACaatctgaaaaaaagaaatctaaGGAAACAGAAAAATCAGAAAAAGCAAATTCTGAAGAGCTGGCAACAGAAGTGATTGTGAGTAAACATTCTGAAAGAGAAATTTCagtaggaaaagaaaaatcagaTGAACCATTAGTGAAAAGTGAAGAGAaatcagaaaaacaaaacgttgaagaaaaagaaagaaaagtaaatGAAAATGAAGCAAATGGGAAAGAAATAGAATCAAATGAAAATCAGAAACTaagtagaaaaagaaaatcagaGGAAAAGGATGTTGAAgatgaaagtaagaaaaagaaatccaaggaaaaatcaaatgagaagaagcacaagaaaaagaagcataaaaagaaacacaaacgacataagaaagaaagggaaaagaGGCATTCGCAAAGTGCCGAAGGAAATAATGATTCTACAGAAGAGACACAGGACGATTCTGAAGATGATGGAAAAGAAGAAGCTGCTATTGAATAA

Transcript

ENSQPTT00000064147

GTGAAAGTTGTTCTGGAAAAGTTTAGCCTTTTATTTCGCACTTTATTCCAAGTTTCCGCTTCCTAAGAGCAAAAAGACATTTGGTATAAATAAGTAGTAGCCGTATTTTATCCTAGGTGTAGTTTTTTTTTCGTGTTTAggctgttttttttccttctaaaGTTAGTTTATCGCAACCACATGGTGAATACAAGATGTCATCGACAACAATGCAACTTAGATTCTCTTGACTCAAAACTAGCTTTTCTAACGGAAAACTAGGCTTTCTTTACGTTTCTTTGATCTATTTTCTCATGTCTTGTATACATTATAAGTTTCGGAGTAGTTTGGAGTATGATACGATCACGTTTGATGGCTTGGCAATCTCTCTTGCCGACCTCAAAAAATCCATTATGGCGCAGAAAAAATTCGCTAAGGTCACAGACTTCGACTTGGAAGTGACGAACGCACAGACTAAAGAAGAGTATAAAGATGAAAATATGCAGATTCCTAAAAACTCTTCTGTAATAGTTCGACGTATTCCTACAGGAACTCGAAGCAAAGCACAGTTAGCAGCGGATAGGGCAGACCCTTATGCAAGTGGATTACCCAAAACAGTACGTACTAGTCAGAATAGATTGTTTTATActtctactactactactacttctAATCAAGTCAAGAAAAGTGATCTTCAAGAACTACAAACTTCTGTTTCCATTAAACAGAACAAGGTGGTTGACTTGGTGAGCTCAGATGCTTCTGAAGATGACAAGTTGAAAGCAATGATGTCACAGGCTGGAGAAGACTGGCAACCAAACCAGTATGTTAGAGGGCGTGGTAGGGGATATAATCCATCAGGACCTCTGCCTCCTAATTATGTTTGCTATAGATGTGGGAAACCTGGCCACTTTATTAGAAACTGCCCTACTAATGGGGTGAAGCGAACTATTGGAATCCCAAGAACTTTTGGTGATGATCAAGATAGTGGTACAACAGAGGATTCAAACAAAGAGTCCAAAAAGGAATCTTCAGAACCAACCAAAACCTTGGTCCCTATACCAGAGCTAGATACTTCTAAAAAGGATCGTAAAGTGCCGTCGGAGCTGAAATGCCCTATGTGTAAAAACTTGCTGAGTGATGCTGTTCTTATTCCCTGTTGTGGCACCAGCTATTGTGAtgaatGTATTCGTACCTATCTACTTGAAAATGAGCAAGTGTGTCCAACATGTGGCGCTGAGGATGTTTCTCCTGATTCCTTGATTATCAATAAGCAGCTCAGACAGGCTGTGAATAACTTCCGTAATGCCAGACCAGCCAGCCCATTTGTTAACAGTACGACAGATAGTCCAACACCAAGCATTGCTGCCGTCGACAAACCAGCACCCAGTAGCACTGTTgataaaccaatcacaagtAGCACAATTGATAAAACAGCACCCAATACCGCCGTCCCAGAAACTAAACCCCAGTCAGTTAAACCTGAAGTGAATTCTCCAGAAACAAgTGATAAAGACAAATCTGAAGAAAAGGTTTCAAGCACAACTTCAGAAATTCCCCCAAAAGATATATCTGAAGTAAAGGAGgaggaagtaaagaagaaagaaggatCTCCTCTGcctGTATTGAAAACAGAAGTCAGTTCTCCGAGAAGAGAACCAGAGGATCATCGAGATCATCGACTTCCTGCAAGAGAACATCTTAGAGCAGAACCAGGACCTGTTGGACCACATGCTGGTCAACATCCTGGTCAACATCCTGGTCAACATCCTGGCCAACATCCTGGTTATGGTCTTCAGGATCACCCAATTCACAGGGGACCACCTACCCATGGACCTGGTGTTGGTCATCCAATGGTAAAACCAATGATTCGTCGTAATATTCCACCAGACGGTGCCCTCCTTGTACCCACCATAAGGGTTCCTCGTCCACTTCTTGTTCAACCACACCCAGGCCCACTCATGGCACAACCAAGGTTTATAGGCTCTGCAGCTCTGGGTTTACACCCTGTTGCAGCACATCCTGGCATTGTGCAACCTCTACTGGGAGCACCCATTCCTTTTGGTGTCAATCCTCCTGGGTTCCGCCCATTTGAAAACCCTAGACATGTTGAAGGTCTTCCACCAATGTCTGAGGAAGAGTTTTATCGTTATCAAAAAAAGATGAAACTGAGgactaaaagaaaacacagagaaaaagaaCCAGGTGACAGACATTCTAGGCGGGAAAAGTCATCCAACCGTAACCAACCTGGCAACTTTGATGATGAGCTTTCACAGTATAAAGCTTTACAAAGACACCGTACAAGACGAAGATCACGTTCAAGATCATATTCCCGCTCTCCTTCCAGAACTCACTCAAATTCCCGTTCATTTTCCCGTTCCTTGTCACAATCATCACAGAGTTTGTCGAAATCTCCCACCCCAGAAGACTGGGATAGGTCTCGTACTCCTTCTCCCGTCCCCTCTCCCGTAAAATCAGGATCAAAGTCTCCGGTccaaaatgaagaaaagaaaaccaaacagaaaaagagaaaaaagcatCATAAACACAAGCACTCCAAGAAACAGAAACCTTTAGAAACTGAGAATGGTGAAAATGAAGTTAAAGAAAAGGGAGAAAAGGAGAAAACTGAGAAGAGGAAATCAAAGTCAAAGAAAAAAtccaaagacaaagaaaagagCTCTAAAAGTAAGAGGAAATCTAAGGAAAATACAGAGAAATCAGAAAAAGTAAATTCTGAGGAATCTGTGACGGAACTACATGAAAGCGAACATTCTGGAAGAAAGAAATCTAAGGACACAACAGAGAACTCAGGAAAAGCAAATTCTGAGGAGTCGGCAACAGAGGTGAATGAAAGTGAACaatctgaaaaaaagaaatctaaGGAAACAGAAAAATCAGAAAAAGCAAATTCTGAAGAGCTGGCAACAGAAGTGATTGTGAGTAAACATTCTGAAAGAGAAATTTCagtaggaaaagaaaaatcagaTGAACCATTAGTGAAAAGTGAAGAGAaatcagaaaaacaaaacgttgaagaaaaagaaagaaaagtaaatGAAAATGAAGCAAATGGGAAAGAAATAGAATCAAATGAAAATCAGAAACTaagtagaaaaagaaaatcagaGGAAAAGGATGTTGAAgatgaaagtaagaaaaagaaatccaaggaaaaatcaaatgagaagaagcacaagaaaaagaagcataaaaagaaacacaaacgacataagaaagaaagggaaaagaGGCATTCGCAAAGTGCCGAAGGAAATAATGATTCTACAGAAGAGACACAGGACGATTCTGAAGATGATGGAAAAGAAGAAGCTGCTATTGAATAACTCTGGATATTATTTGGAGAAAATCCCTATGATCTGTGAGTGCTAGTTTATATATAGTGGTAGGATATGGATGGATGCACGTATATAATGTGCAATGACTGCCAAACTGTCCAGTAAATGTTACATTGGATGTCAGTAATAATTGTTACTTGTGTAGCTCTGCACAATAAGGATGCCCTTCTAAAGGCTGGCTATGGATGGTTTGTCATCATTTCCAAGAGAGTCTGAAGTCAAAGACATGGAGGCCATATTGGTGGTATTACAGTATATTAACAGAAGAAGCTATtgacaaatcttttgtttaaaaaataaacagaaaagGGAACCAAAAAAAAGTTCTCAAGATATTGCATTCCCTCGACATCTCATGAATAACTTTTACTAAAACTCTATAGATATCTTCAAGATTCACATCACTCATCCTTATATCTTACCAAAAATGCTGTAAATAAGAAACTTAACACTGCAGtcctataaataaataaaatctcAGACCACTAATGAACAATAATTACACTTCAATTGGCAAGTGGGAAAACAATGCTTAGTATTTGCTctgaactaaaaaaaatacttgCCTTAGCAGGAAAGAGAGCTTCAATCTGTTCTAtactttaaaatcaaaaaaagattGTGTGAACTGATTgcagaaaataatatttgtatttttctcaATAAAACTCAAAAGAAGATTAAAACTTGTCGTAATGTCTTAAAGATTTCATGAAAAAATTGAGTGCAAATACTcttttttacagttccattcagtgatcACAAAAAGTAGTGCTAAGTcgaggctggagtttctgCACATAGCAAAACTATGTTTTTATCATGCGCGGCAACTCCAACCTCGGCTTGGAACTATTAATTGTGGTGAATAAAaggaactgtaaaatgtaGCATTGGTTTGTAGGTGACTCAAGCAAGTGAAtgagaaattttaaaacaaatttaataaaaatggTTTCAAATGATAGGTCTTCTTAGTGTATTTAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7Z6E9	E3 ubiquitin-protein ligase RBBP6 OS=Homo sapiens OX=9606 GN=RBBP6 PE=1 SV=1
P97868	E3 ubiquitin-protein ligase RBBP6 OS=Mus musculus OX=10090 GN=Rbbp6 PE=1 SV=5
B9DFV2	E3 ubiquitin ligase PQT3-like OS=Arabidopsis thaliana OX=3702 GN=At5g47430 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003950 (this species only)
Ubiquitin family	ULD\|UFD\|DWNN · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 activity RING\|U-box · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04564 all species →	U-box	U-box domain	Domain	Interproscan
PF08783 all species →	DWNN	DWNN domain	Domain	Interproscan
PF13696 all species →	zf-CCHC_2	Zinc knuckle	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR003613 all species →	Domain	U-box domain	Interproscan
IPR014891 all species →	Domain	DWNN domain	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR025829 all species →	Domain	Zinc knuckle CX2CX3GHX4C	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15439 all species →	RETINOBLASTOMA-BINDING PROTEIN 6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10624	RBBP6; E3 ubiquitin-protein ligase RBBP6	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.