Gene detail

Detailed information of ENSQPTP00000054820.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031575223.1, PAX3- and PAX7-binding protein 1-like [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

ENSQPTT00000065165

ATGGCCGCTATGTTTCGAAAATCAAAAcgtaattttagaaaaaagaaCCTGGAATTAAACGAAGAGGAAGATGATGCAAACGAGAACGAATCGACAGAGAACATTAATGCAATTACTACTGGAAAATTGGCTGAAAAAGTGAAGAGTAAAGCAAAGATTGAGAAGGTTGCTTCGACAAGTTCTCTGTTGAGTTTCGACAACGATGATGAGGAAGAAGTTTTTCAAGTTCGTAAATCAAAGGAAAGTCGGAAGCTGAGCAAAAAGGCAAAGTCAAAGAAGGAAAAGCAAAAGGACAAAGGTAGAGAAGGCGAGAATGTTGATGGTCAAAGTAGGCTAGAGTCTCCAGAAAATGACGACATTGCTGACATAAAGCTTGCAGCTCTACGGGCTGAGCTAAATCAGATGTCAAAACTAGacgaagatgaagatgatgatggtgaagaaaGTGataattctcaagagaataaagAAGCAAGTTCAAATTCACTAGCTGCAGTCAGGCAGCATCAGTTTAATATACCAGACGCTGCAACCATACATGCcttgaagaagaagagagaAATGGCAAGACAGTCTGGTACAGGACAAGACTTTATTCCCTTAGACGACACTAAAAGGTTTTCTGGTCGGTTTGATTCAGCTTCACGTCTGGTGCGGGAAGATGAAAATGATGCaagtgatgatgaggatgggcCTATCAGTTTTAATGCTGTTAAGACCCAAGATAATAACTTTTACATGAAGGATGAGGATAATGAGAATGAGGAGGGGGAAgacgaagaagatgaagaaacaAAGAGATGGGAAAATGAACAGATCCGTAAAGGAGTGTCGGCATCTCAGGCCCAGCAAGATAAAGAGCCGCAAAGTTATGGAGTACAGAATCTTTCAATTTCTCAAGAGAGTTACCAACAAAGCTCTTTATTCAACCAAAATGTGTATCCTTATGGAGGTGAATATGGCCAGGAATCCACCCAACAGAAATACAATGGTTCGCATCTTCCTGGACAAATTAGGTCATCAAAGTCACAAGTCATTACTATGGAAACAGTCTGGGATGCAATGAACAAGCGACTAGAATCCTTAAATGAGGTTCATCGTGGGCACTGCATGGAGCAAGATAAGATCACAGAACACCAAAGGGTGTCAGAAGAAAGTATTGAGAATCTTATACGGCGAGGTGTAGAGGCGGAGCGGCAGTATGGGTTTTACCAAGAGATGAGGGGGTATGTCAGGGACTTGATAGAATGCCTTAATGAAAAGGCTACAGCTATAGACGCAGCAGAAAGATCTATGAGTGACCTACTAAAGCAAAGAGCACAGCGTCTTGTGGAAAGACGACAAGAAGATGTTAAAGATCAGGCTGATGAATTTCTTTCCTTACAATCTGGAAAACAAAATCAGAATGTCAAACCAATAATAGATGAGTTTGGCAGAGACATGACCATGTATGTGGAAGAACGCAAGAAACGAAGGGCGGCAGATAGAGAAGGAAGAAGAATGAGAAGGCGAAGAAATAGAGAAATAGCTGGTTCTAATGCTGCACATCATGAGGGAATGTCtactgatgaagaagaaacgGAAACAGATTCACGGCAGCTGAAGTCTGAATCGGAGAGAATCATTCAAGAATCAAGAACATTATTTGAAGACGTCATAGAGGATTTTAGCTCCATTGAAAAAGTCAAATCAAAGTTTGAGAAATGGAAAAATGTGTGCGAAGATAGCTACAAAAATGCGTACATTTCCCTATGTCTTCCAAAACTCTTCACCATGTTTGTGCGTTTGGAACTCCTTGGATGGAATCCATTGAACGAAGATGCTTTGGACATAGAGCAAATGTCTTGGTATAATTCTCTTATTGGATTTGGTTTCCATGAACATGAAGATATCGACCCTAAAGACGATGACATCAAGATAATACCTAGCATAATAGAGAAGGCAGTTCTTACTAAATTAACAGgATTAGTTCAACATGTTTGGGATCCCTTGTCAAGTAAGCAAACAGAGAGACTCATTCAACTTCTAAAAAATCTTTCCGATGACTTCCCTACAGTCCAGGCAGACAACAAAACCACCCAGCAACTGTTCAGTGCCATTGTAACTCGTTTGAAAAAAGCAGTCAATGAAGATGTATATGTACCTCTTTATCCAAAACAATTATTAGAAAACAAAAGTTCTGGTGTACTAGAGTTTTTCCAAAGGCAGTACTGGTCTTGCTATAAGCTATTTTGTAATATCTTATTATGGGATGGCCTGTTATCTTCCGGAGCAATACAACAGTTAGCACTGGATGGATTACTGAATCGATACCTCATCTTGGGCCTACAACATTCTACACTATATTACGACAGTctagaaaaatgcaaaatgatcACCAACACCATCCCCAGACCTTGGTTAACCTTACTCACAGATTCTACTTTGCCCACCCTAGAGACCTTTGCGCGGTTTCTTGTCAACTTGGCTTCCTGTTTACAGAGGTCGAGCGCTGGCTGCTCGGactctgaaaagaaaaaagctcGgAGTGGATGTAAGAAAATCGTCCAACATTTAAATTCACTCAAAGCAAAAGCCAAGGCAAAGGCAGTAGCCGCTGAACATGCTTTAGGCGAAGTTGGTGGACCCTAA

Transcript

ENSQPTT00000065165

CCCATGATGCCTCGCAGGCTTAGGTAGAAGAACATGGCCGCTATGTTTCGAAAATCAAAAcgtaattttagaaaaaagaaCCTGGAATTAAACGAAGAGGAAGATGATGCAAACGAGAACGAATCGACAGAGAACATTAATGCAATTACTACTGGAAAATTGGCTGAAAAAGTGAAGAGTAAAGCAAAGATTGAGAAGGTTGCTTCGACAAGTTCTCTGTTGAGTTTCGACAACGATGATGAGGAAGAAGTTTTTCAAGTTCGTAAATCAAAGGAAAGTCGGAAGCTGAGCAAAAAGGCAAAGTCAAAGAAGGAAAAGCAAAAGGACAAAGGTAGAGAAGGCGAGAATGTTGATGGTCAAAGTAGGCTAGAGTCTCCAGAAAATGACGACATTGCTGACATAAAGCTTGCAGCTCTACGGGCTGAGCTAAATCAGATGTCAAAACTAGacgaagatgaagatgatgatggtgaagaaaGTGataattctcaagagaataaagAAGCAAGTTCAAATTCACTAGCTGCAGTCAGGCAGCATCAGTTTAATATACCAGACGCTGCAACCATACATGCcttgaagaagaagagagaAATGGCAAGACAGTCTGGTACAGGACAAGACTTTATTCCCTTAGACGACACTAAAAGGTTTTCTGGTCGGTTTGATTCAGCTTCACGTCTGGTGCGGGAAGATGAAAATGATGCaagtgatgatgaggatgggcCTATCAGTTTTAATGCTGTTAAGACCCAAGATAATAACTTTTACATGAAGGATGAGGATAATGAGAATGAGGAGGGGGAAgacgaagaagatgaagaaacaAAGAGATGGGAAAATGAACAGATCCGTAAAGGAGTGTCGGCATCTCAGGCCCAGCAAGATAAAGAGCCGCAAAGTTATGGAGTACAGAATCTTTCAATTTCTCAAGAGAGTTACCAACAAAGCTCTTTATTCAACCAAAATGTGTATCCTTATGGAGGTGAATATGGCCAGGAATCCACCCAACAGAAATACAATGGTTCGCATCTTCCTGGACAAATTAGGTCATCAAAGTCACAAGTCATTACTATGGAAACAGTCTGGGATGCAATGAACAAGCGACTAGAATCCTTAAATGAGGTTCATCGTGGGCACTGCATGGAGCAAGATAAGATCACAGAACACCAAAGGGTGTCAGAAGAAAGTATTGAGAATCTTATACGGCGAGGTGTAGAGGCGGAGCGGCAGTATGGGTTTTACCAAGAGATGAGGGGGTATGTCAGGGACTTGATAGAATGCCTTAATGAAAAGGCTACAGCTATAGACGCAGCAGAAAGATCTATGAGTGACCTACTAAAGCAAAGAGCACAGCGTCTTGTGGAAAGACGACAAGAAGATGTTAAAGATCAGGCTGATGAATTTCTTTCCTTACAATCTGGAAAACAAAATCAGAATGTCAAACCAATAATAGATGAGTTTGGCAGAGACATGACCATGTATGTGGAAGAACGCAAGAAACGAAGGGCGGCAGATAGAGAAGGAAGAAGAATGAGAAGGCGAAGAAATAGAGAAATAGCTGGTTCTAATGCTGCACATCATGAGGGAATGTCtactgatgaagaagaaacgGAAACAGATTCACGGCAGCTGAAGTCTGAATCGGAGAGAATCATTCAAGAATCAAGAACATTATTTGAAGACGTCATAGAGGATTTTAGCTCCATTGAAAAAGTCAAATCAAAGTTTGAGAAATGGAAAAATGTGTGCGAAGATAGCTACAAAAATGCGTACATTTCCCTATGTCTTCCAAAACTCTTCACCATGTTTGTGCGTTTGGAACTCCTTGGATGGAATCCATTGAACGAAGATGCTTTGGACATAGAGCAAATGTCTTGGTATAATTCTCTTATTGGATTTGGTTTCCATGAACATGAAGATATCGACCCTAAAGACGATGACATCAAGATAATACCTAGCATAATAGAGAAGGCAGTTCTTACTAAATTAACAGgATTAGTTCAACATGTTTGGGATCCCTTGTCAAGTAAGCAAACAGAGAGACTCATTCAACTTCTAAAAAATCTTTCCGATGACTTCCCTACAGTCCAGGCAGACAACAAAACCACCCAGCAACTGTTCAGTGCCATTGTAACTCGTTTGAAAAAAGCAGTCAATGAAGATGTATATGTACCTCTTTATCCAAAACAATTATTAGAAAACAAAAGTTCTGGTGTACTAGAGTTTTTCCAAAGGCAGTACTGGTCTTGCTATAAGCTATTTTGTAATATCTTATTATGGGATGGCCTGTTATCTTCCGGAGCAATACAACAGTTAGCACTGGATGGATTACTGAATCGATACCTCATCTTGGGCCTACAACATTCTACACTATATTACGACAGTctagaaaaatgcaaaatgatcACCAACACCATCCCCAGACCTTGGTTAACCTTACTCACAGATTCTACTTTGCCCACCCTAGAGACCTTTGCGCGGTTTCTTGTCAACTTGGCTTCCTGTTTACAGAGGTCGAGCGCTGGCTGCTCGGactctgaaaagaaaaaagctcGgAGTGGATGTAAGAAAATCGTCCAACATTTAAATTCACTCAAAGCAAAAGCCAAGGCAAAGGCAGTAGCCGCTGAACATGCTTTAGGCGAAGTTGGTGGACCCTAACGTGATCAAACTCAAGAAAATGGGTTTCTGTGTAGTATAATTATTATGTTTTTTCGTTCACAGAACATCAGATATGACGTGTAATATAAAATGTAATAAATTGAAGTAAGGAGTAATATAGTAACGAAAGAAGAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y5B6	PAX3- and PAX7-binding protein 1 OS=Homo sapiens OX=9606 GN=PAXBP1 PE=1 SV=2
P58501	PAX3- and PAX7-binding protein 1 OS=Mus musculus OX=10090 GN=Paxbp1 PE=1 SV=3
Q8BKT3	Intron Large complex component GCFC2 OS=Mus musculus OX=10090 GN=Gcfc2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005401 (this species only)
Transcription factor family	GCFC · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07842 all species →	GCFC	GC-rich sequence DNA-binding factor-like protein	Family	Interproscan
PF15458 all species →	NTR2	Nineteen complex-related protein 2	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022783 all species →	Domain	GCF, C-terminal	Interproscan
IPR028211 all species →	Family	Pre-mRNA-splicing factor Ntr2	Interproscan
IPR012890 all species →	Family	Intron Large complex component GCFC2-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12214 all species →	GC-RICH SEQUENCE DNA-BINDING FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000390 all species →	Biological Process	spliceosomal complex disassembly	Interproscan
GO:0071008 all species →	Cellular Component	U2-type post-mRNA release spliceosomal complex	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSQPTP00000054820.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.