Gene detail

Detailed information of ENSQPTP00000055138.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031570490.1, TNF receptor-associated factor 5-like [Actinia tenebrosa]
Species Actinia mediterranea · all data for this species · gene families

Sequence

CDS

Transcript

ENSQPTT00000065526

ATAATAGCACGAATACACTTTATTTGGAAGTGATGTTGCTTTTTTAGCACAAGTTGCCTAAGAGTTAGCTAGTTTTGTAGtgatttttctccttttcttttcaagaATCACTTGAGCTCTTTAATCTCTTGTGAGCAGCAATTTTTACAGTTtgaagcaaaaagaaagaataaaatacagGATCCAAAGTGATGAACATCCCACTCCAGACCCATTGCCCTCGATGTGACGTGTTGCTATGCAACCCAAATACCATCCACACTTTTGAAGAACATCAACAAAATGATCTCAGTTCTGCGGATTCATCGGCGTTCATTCTAGGACCAGAGATTGAATTCCAGAACAACTTCTCTCGCTCGTGCCGCATGGATCAACAACGACAGCTGCACGCTTCGATACAAGAAAACGGTTGTAGGAGAGCGCGGCATAGACGCTTCTCATCATCAGACTCAGAAACTATTCTGGGACAAGCCGGTGAAAGCATCAACACTGATTCCATTGAGAAGTTTCTATCGCTCTGCTTGCAGCAGTTTGAAACATGCCATTCTAGAACTGCACGAAATGGGGATGGAACTCAGAACGTCAAGATTGATAATTTAAAGGAAAACTGGGTCagcttcaataacaccaataATCACCACAGTACCCCAAACCAGCACAGTACCCCAAACCAGCCGGCCAGTACCCCAAACCAACACAGTACCCCAAACCAGCACAGTACCCCAAACCAGCACAGTACCCCAAACCAGCACAGTACCCCAAACCAGCACAGTACCCCAAACCAGCACAGTACCCCAAACCAGCACAGTACCCCAAACCAGCACAGTACCCCAAACCAGCACAGTACCCCAAACCAGCACAGTACCCCAAACCAGCCCATCACGTTCAGCTTGAAGGGACCCAGACCAACAGGTCGTACCTGTCGCTACTGTCACCGAGAGATGAGGACAGGCACGCGTGGAATGAATCATCATTTCGAGGTCTGCCCGAAGTTTCCACTCGAGTGTCCAAATCTGTGCGGCAAGATGGAGCTTGCACGAGATGAGCTGTCTAACCACATCATGGAGGAATGTACAGAGGCTACAGAATCGTGTTCCTATCAAAGTATAGGATGCTCATTCCAAGGTTCGAAAACAAATTTATCGAATCATCTCGAAAAGAACATCGAAGACCACCTCCAGTTGGCGTGCGAAGTCATCGACGACCAGAAAGCCGAACTAGAGCGACAAGCCGAGCGAATCCGACTGCAAGACGAAGCCATCGTTCAACTGAACGACACAGTAGTCAAGATCAAGGCTCTATTCGATGAGCAAGTGAAACTGAGAGAAAAGCAGGATAACGCTATCACCAAACTAAATGATCAACTGAAAGAGCATAAAAAGAATTACAGCAAATTGGAAAAAGAGACGAAAGCGAAACTCGAGGAATTGGAAAAACGTAATAAggatatcaataataatattagtaataataatgaagaagAACTCATACGCTACCCTGGGCTGAACGGTTATGGGGAACAGATTTGGAAGATTTCGAGTTTTGGGAAAAGGATTTCTCGGATTAGGACGGGTCGAAGTGAAGATCCAATTTGCAGTGAGCCGTTTTATACCTCTGCGTTTGGGTACAAAATCTCTTGCTGGGCTTATTTGAATGGACGCGGCAAGGAACTGGGACAGAGTCTGTCTATCTACGCATGCGTGATGAGTGGAGAGTACGACGCGGTGTTGAAGTGGCCAATCAAACCGCGCTACACGTTCATACTTCTAGATCAGAACCCGGATGTGGGAAAACGGAAGGACCTTGTGCGCGTGCGCAAGGTGCACGACTTCAAGCGCGATGACGTCAGGCGGAAGGGTATCGATCGACCGAAACGAGACGAAAGGGCGATTATTGTAGGATTTGATGATTTTGTTTCGTTGGAGAAACTGGAAGCTGGGAATTACCTCGCCGAGGATTCGTTATACATTCGGATTTTGGTCGACATTACCGACACCTAACTGACATTAATCGAAATGTCGGGGCTTTGATTCGTCGGAGAAACTGGAAGCTGGGAACTACCTCGCCGAGGTTTCGTTATACATTCGGATTTTGGTCGACAGGGGCTTTGTTTCATTTGAATGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O00463	TNF receptor-associated factor 5 OS=Homo sapiens OX=9606 GN=TRAF5 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002370 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02176 all species →	zf-TRAF	TRAF-type zinc finger	Family	Interproscan
PF21355 all species →	TRAF-mep_MATH	TRAF/meprin, MATH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001293 all species →	Domain	Zinc finger, TRAF-type	Interproscan
IPR002083 all species →	Domain	MATH/TRAF domain	Interproscan
IPR049342 all species →	Domain	TRAF1-6/MEP1A/B-like, MATH domain	Interproscan
IPR008974 all species →	Homologous_superfamily	TRAF-like	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10131 all species →	TNF RECEPTOR ASSOCIATED FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005164 all species →	Molecular Function	tumor necrosis factor receptor binding	Interproscan
GO:0009898 all species →	Cellular Component	cytoplasmic side of plasma membrane	Interproscan
GO:0033209 all species →	Biological Process	tumor necrosis factor-mediated signaling pathway	Interproscan
GO:0070534 all species →	Biological Process	protein K63-linked ubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSQPTP00000055138.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.