Gene detail

Detailed information of ENSQPTP00000055573.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031558296.1, LOW QUALITY PROTEIN: radical S-adenosyl methionine domain-containing protein 2-like [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

Transcript

ENSQPTT00000066010

AGAGtggacaattcttttgttttgcgtTGATAGGAACTTCAAACAAGTGACTTGAGTAAATTTTAAATGTCAATTCAGTATACAGGTGACCTAGTTCAATTCCGAGAAATATGAATCTTCACGGGTCGTTCGTTTAGCATTTTTGAATACGTATGTCGGCCATGATAGAAGGGTAAAAAGGTGAAGAATTTGCCAACGCATTTATCTTTAAGCGTATTAGATTCCCTTTCACTTATAAAAACTGTAAGCAGGACTAAAGTATTGAGCACAGCTTTTGGATCATAATTGTGCAGGAGAACATGAAACCTTTAAGCGTAAACTATCATTTTACTAGACAATGCAACTATCATTGTGGCTTCTGCTTTCATACTGCCAAGACATCGTTTGTTTTACCACTGGAAGATGCCAAGAAAGGACTAAAAATGCTCACGGAAGAAGgaatggaaaaaatcaatttttctGGTGGGGAGCCATTTCTTTACAAAAGAGGCAAGTTCTTGGGTGAACTAGTGCAGTATTGCAAGCAAGACCTATGTTTACCAAGTGTCAGCATTGTTAGCAATGGTAGTCTAGTCACAGAAAAGTGGTTCGACACATACGGAGAGTACCTGGATATATTTGCGGTGTCATGTGACAGTTTCGATGAGGAAACCAATAGGATAATTGGACGTCagcaaggaaagaaaaatcacTTGGAAAGCCTTTACCGAGTTCGTGACTGGTGTGCTAAATATAAGGTGGCATTCAAACTTAACACGGTGGTGAACGTCCACAACAAAGATGAAGACATGTCAAGCGAAGTTCAAAACCTCGCACCCATTCGCTGGAAGGTATTTCAGTGCCTTTTGATTGGAGGAGAGAACGCAGGAGAAACGGCATTACGTCGAGCAGAAAATATGGTAGTCAGTGATGAAGAGTTTCAAGCGTTTCTTGACCGCCATTCCTCAGTCACGTGTTTGGTGCCGGAATCCAATAAACAGATGAAAGACTCATATTTGATGCTGGATGAATATaTGCGTTTTCTGGATTGCAGCAAGGGCAACAAAGACCCTTCTCGCTCTATCCTGGATGTCGGTGTTCAGAATGCACTGTTGTTCAGCGGGTTTGACgaggaaatgtttttcaaaaggGGAGGGAAATATACTTGGAGCAAAGCAGACCTAAAACTTGATTGGTGAACATTTGGTGCATTACTATTATGCaaatactttaaaaaaggttggcgaaggttttgttgcatattGCACGTTGTATGTTTACATTGTATGTTTCACTACATGGGCTATGTGAATTTGATAAGCGAAAGGTCACCACGACATGGAGTTTTCCTTAATCGTCTGCACATTTTTCTGATCTATTTCCTTTGTGCTGACATTAGTTCCATACGAATATAATACATTCTAAGCTAAGTAAATAGCAAGCAAAataacatgcaacatgcaacgaAACCTTCAGATActtgtttttgaaatagatgTATATGTCTTGGGCTTGTGAGAACTTATTATAAGCACCCCCATATTGACGTATAGTTTTTTTATGGACAATTACCACAAACATTACACAAACATATCAGTTTATCCACCaacacaattttttatttctagttAATTATTTACGTAGTTAACTTTATATAACAAACGTTAGTTTGCAAACGCTTAATGGTTAAAGTGCCTGGCAGTATACCGGATCGGACGTCAGGCGCTTTCTATCCTAATCTGAGATGAATTATGACAAGGAGGATCTAGGAATCGGAGAAAGGGAAAAGAGGAAGGGAACCTCGTTAAGCCTCATAGAGACTTCTATGACTAACCGAAATAAAAGGGAGGGCCGCGACCGCTTGGGCTCACCCATAAATCCGCCATGTTTTCTAATTTCTAGTTCCTTCTATTATATTTGGAAAGGCAGGAGCCTCCCAAGCCTACTTGGATCTTGAACTGTTTCATTTCAGATGCCAACTCGAcctagtttttttttcttggacATCGGAATGGCTAGTAGGATTAAGCAAATATCAAGATTATATTATTGTGAGGAGTCGTTAACATGACACCAGAAGGAGTCTTGTTCCGGTACGAGTCCATCCCCGGTTGCCATAAATTTCTTTGTAATTGTTTTCACGGTACCAGAACGAAGTTTCACACCGGaaatagtttttatttattttatttattatt

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O93384	S-adenosylmethionine-dependent nucleotide dehydratase RSAD2 OS=Oncorhynchus mykiss OX=8022 GN=rsad2 PE=2 SV=1
Q6EE23	S-adenosylmethionine-dependent nucleotide dehydratase RSAD2 OS=Siniperca chuatsi OX=119488 GN=rsad2 PE=2 SV=1
Q2HJF9	S-adenosylmethionine-dependent nucleotide dehydratase RSAD2 OS=Bos taurus OX=9913 GN=RSAD2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007155 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04055 all species →	Radical_SAM	Radical SAM superfamily	Domain	Interproscan
PF13353 all species →	Fer4_12	4Fe-4S single cluster domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007197 all species →	Domain	Radical SAM	Interproscan
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR026372 all species →	Family	S-adenosylmethionine-dependent nucleotide dehydratase RSAD2	Interproscan
IPR006638 all species →	Domain	Elp3/MiaA/NifB-like, radical SAM core domain	Interproscan
IPR051196 all species →	Family	RSAD2 and Viperin antiviral	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21339 all species →	RADICAL S-ADENOSYL METHIONINE DOMAIN-CONTAINING PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0051536 all species →	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0005811 all species →	Cellular Component	lipid droplet	Interproscan
GO:0051607 all species →	Biological Process	defense response to virus	Interproscan
GO:0051539 all species →	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15045	RSAD2; radical S-adenosyl methionine domain-containing protein 2	-	Influenza A	ko05164	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.