Gene detail

Detailed information of ENSQPTP00000056529.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031558310.1, U4/U6.U5 tri-snRNP-associated protein 2-like [Actinia tenebrosa]
Species Actinia mediterranea · all data for this species · gene families

Sequence

CDS

Transcript

ENSQPTT00000067089

CCTGGATACTAGTAACcaattccaagatggcggaaaaCACGGAGTCGGAAAAGGCAGAGAAACGTGGATCAAAAAGACCTTTAGTAGAAGATTAcagcgatgatgatgacgaagaagagaaaaagagagTTATAGAAAAGAAGGAATATCAGAGTAGACATTGTCCTTACCTGGATACTATTAACAGACATGTTCTTGACTTTGACTTTGAGAAGCTATGCTCAATATCCTTATCACATATCAATGTCTATGCATGTTTGGTCTGTGGAAGGTATTTTCAAGgtCGTGGACGGCACTCCCATGCATATACTCACAGTGTTCTGGTGGATCACCATGTTTTTCTTAATCTGCATTCACTAAAGTTCTACTGTCTGCCTGATAATTACGAAGTAATTGATTCTTCCTTGGATGATATCAAGTATGTACTGAATCCAACATTCACAGAAGAAGACATCAAACAAATGGATTCATCAGCCAAGTTATCCAGAGCCTTTGATGGCACTACATATCTACCtgGTATTGTTGGCTTGAATAATATCAAAGCCAATGACTATCTAAATGTTGTTCTCCAAgcttttgcttttgttccACCAATCCGAAACTTCTTTTTGAGAGAAGAAAACTACAAAGATATCAAGAGACCTCCTGGAGATATCATGTTTCAACTAGTTCAAAGATATGGAGAgttgataagaaaaatatgGAATCCAAGAAACTTCAAGGCACATGTTAGTCCTCATGAAATGCTTCAGGCTGTTGTTTTGTGCAGCAAGAAGAGATTCCAGTTTACTGAGCAAGGTGATCCTGTTGACTTCCTTTCATGGTTTCTAAATGCACTACACACAACACTAGGAGGATCCTTGAAAAAGACAAACAGTGTGATATTTAAGTCATTTCAAGGCCGgatgaaaatattttccagaaaAGTTCCACAAACAGAGAATGAAGAAGAGAAGGCTAAACAAATGGGTGAAGAGGAATATCAGGAGAAAGTTACAGAATCACCATTTCTGTATCTGAACTTGGATATACCAGCTTCTCCTCTTTTTAAGGATGAACTGCAACAGAACATTATTCCTCAGatttccattttttcacttttgtCCAAGTTTGATGGAACAACTGAAAAGGAATATAAAACCTACAAAGAATTATTCATCAAGAAGTTTGAGATTACAAAACTTCCTCAGTACCTAATCACTTGCTTTAGGAGATTTGCAAAGAACACTTTTTTTACTGAGAAAAATCCAACAGTTGTAAACTTTCCAGTCAAGAGCCTTGATCTAGCCGAGTATTTATCCACTGATCCTAAGATCCAGGATGCTCATCCACACACTACATATGACCTTGTTGCCAACATCTGCCATGAAGGAGAGCCAGAGGGTGGAACATATCGACTGTTTGTCCTGCACAAAGGTGCCAATAAGTGGTATGAGTTGCAAGATCTGCACGTCAAGGAAATCCTTCCACAAACCATCACCCTATCAGATTCCTACTGTCAGATTTATGAGCTTCAAAAAGATGTCAGAAAAGCAGAATAGGGAGCTGATAACTCTTGGACACCTTCCAGCAATATTGTCTCCAGCATGTCTGGATTAATATGGTCTAATCTTATATACATGCACAGTAACTGTTCTTTAGTCCATGATGAACAACTAATTGACATGTCAATAAACCCAAAATCCTACTGAATCAATGTGCAAAGCATCtatacttttttattttattgttaaaaATACTCTTACAGTAGGTCACtcaataaaaacatcaaaaccaaataaaaaataggcCATACCCAAAAAAAGGTTGGTTCTTAGTCATTGTTTTACGGCTCATGCGtctgcaatcaaacaaaacattgtcattattacatagcgttaaatataatcttcagtgcccccccaaagatttttaGCTTCCGCTGCCCCTGATCCAGTAAGAGTAATGTAATAATTTACTGCAAATGGCCTATAATTTTGTTCCAATAATCTAGTATGCACAGTTCTGTAACCCATTAGTATAGTTAGTGAGATGTGATCATCAGCTTTAACGAAATGCCCCCTAGCTTCCCCCATTCTTTTGTAACTGCTTGTATCAAATATAAGATCGATTGAAATTTCATGTGATTTGAAAATATACTTTTAAAGGAAAATTATGCCAGACTTTTCCCTCTTTACTAAGTGTATATTTGATGGGTTTTTTTGGCtcatttttcttgatttttggCTTTCAATGGAATTCTGTGCATAATAATATCATGGTAGATTGTATTGAAGAATCAATTTCTGGGGGGAGAGATTTTTCTAGACGTTTGTCATTTTAGAGACATTGAGCTCAAAGGGTCAGTGTCAAGTCTTTGAGGTGGCGCTGTTGCAGGGTCACCCTTGCACAATATacatctatttcaaaaaacatcaTCGAAGGTGATAGGCAACTGAAATGGTTTTGTTGAATAtaagaacattgaatcagtctcaacactaaggtccatgttcttgacga

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q53GS9	Ubiquitin carboxyl-terminal hydrolase 39 OS=Homo sapiens OX=9606 GN=USP39 PE=1 SV=2
Q3TIX9	Ubiquitin carboxyl-terminal hydrolase 39 OS=Mus musculus OX=10090 GN=Usp39 PE=1 SV=2
Q5R761	Ubiquitin carboxyl-terminal hydrolase 39 OS=Pongo abelii OX=9601 GN=USP39 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005833 (this species only)
Ubiquitin family	DUB\|USP\|USP · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02148 all species →	zf-UBP	Zn-finger in ubiquitin-hydrolases and other protein	Domain	Interproscan
PF00443 all species →	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR028889 all species →	Domain	Ubiquitin specific protease domain	Interproscan
IPR050185 all species →	Family	Ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR001607 all species →	Domain	Zinc finger, UBP-type	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR033809 all species →	Family	USP39	Interproscan
IPR001394 all species →	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21646 all species →	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0000245 all species →	Biological Process	spliceosomal complex assembly	Interproscan
GO:0006397 all species →	Biological Process	mRNA processing	Interproscan
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579 all species →	Biological Process	protein deubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12847	USP39, SAD1; U4/U6.U5 tri-snRNP-associated protein 2	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.