Gene detail

Detailed information of ENSQPTP00000060801.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031561989.1, cleavage and polyadenylation specificity factor subunit 1-like isoform X1 [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

Transcript

ENSQPTT00000071687

GTATGTACTGACTACTAATCTTTGAAGTACCTCTACGATGCACTCCACACATGGTGTCGTACAATAGAGAGAGTAAGGTATGTACCTCTACGATGCACTCCACACATGGTGTCGTACAATAGAGAGAGTAAGGTATGTACCTCTACGATGCACTCCACACATGGTGTCGTACAATAGAGAGAGTAAGGTATGTACCTCTACGATGCACTCCACACATGGTGTCGTACAATAGAGAGAGTAAGGTATGTGCCTCTACGATGCACTCCACACATGGTGTCGTACAATAGAGAGAGTAAGaCTTATGCCATTGTAACGAGTGAACAAGAACCATGTAAACACATCCCAAGAGTCACTCCAGAAGATAAAGAATTCATCGATACTAACAGAGATTCTCGGTTCATTTATCCAATGATGGACAAGTTTACCATACAACTGATGTCACCTCTCAGTTGGGAAATCATCCCCAATACGCGGCATGATCTTGAGGAATGGGAACACGTGGCAGCAATGAAAAACCTGATGCTTCACAGTCAAGAGACGCACACAGGACGTAAGGGATTCATCTGTGTTGGTACAACCATGCTATATGGAGAGGAGTTTGCTAGCAGGGGAAGGATTTTAATCTTCGATATCATTGAGGTCGTTCCTGAGCCAGGACAGCCGCTAACCAAGAATAAATTTAAGTTACTTTACGACAAAGAACAAAAAGGTCCTGTCACAGCACTGAACCAAGTCAATGGATATCTGGTCAGCGGTATAGGACAGAAAATATACATCTGGAACTTCGAGAATAATGATctgataggaatggcattcATTGATACACAGTTGTACATACATTCTCTTGTCACCATTAGAAACTTTGTCCTGGCTGCTGATCTAGTTAAGAGCATCACGTTGCTAAGGTTACAGACAGAAACTAAAACACTAGCTTTCGTTAGTAAGGATCCACATAACCTTGAAGTGTACGGGACGGAGTTCTTCATCGACGGAACACAACTGGGTTTTCTAGCGTCAGACGCGGACCAGAATTTGATTCTATTCACCTATCAGCCTGAAGCTATCGAAAGTGCAGGTGGTCAGCGGTTGCTTCAGAGAGCAGACATAAATATAGGCAGTCACGTGACTTCGATGTTTCGTATTCGCGCCAAGTCTGGCGAAAAGCCAGGTGGAGAGAAGGCAAAAGATTTACGTCAGCTGACGTATTTTGGCACTCTGGATGGTGGCCTTGGTTTCCTGTTACCCATGACAGAAAAGACTTACAGACGTCTGCACATGCTCCAAACTAAACTAGTTGACTGCATCCCACACTTGGCAGGACTCAACCCCAAGGCATTCAGGATGTTGCAGTCTAAGAGGCATTCTCTCAGCAACCCTCATCGTAATGTTTTGGACTGGGAACTACTGTCCAAGTTCATCCATCTCAGTTTGATGGAACGTCAAGAAGTCGCTAAGAAGATTGGAACAACGCCATCACAGATCCTTGATGATATGATGGACGTGGAACGAGCGTGCGATCGATTCTGATTGATTACATCTGTATATAATCATCCATATATACCACCGTTTAGCTCTGCAGCTTCAACCATTACGCCAGACTTGAATCACTGAAGGTTGCGCGACGAATCTTGGACTGCTATTGGGCTTGTCACTTGTGATTGTCTGAAAGAAACACTTGGCTGTTCAAACAAAAATAGTTGCTTGTTGACTTGTCCATAATAAAGACGGTCTTGCCCGTCTATACTCTTTCCCTCTTCCAAGCAGATCTTTTTAAATGAGTTACTTCAAGCGAAAGGCATTGATTTTACCCCCTGCCACCAAACACGGGGGCAGGGATCGAAGATTTTTGTCTTGTGAATGAATATAGTTTGCCCCAAGTTATGCCTGACTGGTGAAACAAACCTCATGCAAAGCTGCCCTAACAGACTATAGTCAAGAAAAAGATGGCCGTGTCCCCCATAAAAGAACACTCGTTAAATACATAACGTCAGGAAGCACATTTTTACACTGTTGCTCTTGTACACTGAATAAAAGGCGAACAAAAAATCTTCTCATTACGAATTTATTGAACTGTAATAATTCAATATGTCAACACTAGCATTTCACAATGAAGACCCAGCTCGTCTAGATTAATCCCTCTTTCTATTAATAGAGGTAAAACCAACTGTGATTCGATAAACTTTTTCTGTAAAGTCCAACcg

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0A0R4IC37	Cleavage and polyadenylation specificity factor subunit 1 OS=Danio rerio OX=7955 GN=cpsf1 PE=3 SV=2
Q9EPU4	Cleavage and polyadenylation specificity factor subunit 1 OS=Mus musculus OX=10090 GN=Cpsf1 PE=1 SV=1
Q10570	Cleavage and polyadenylation specificity factor subunit 1 OS=Homo sapiens OX=9606 GN=CPSF1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002447 (this species only)
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DDB1 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03178 all species →	CPSF_A	CPSF A subunit region	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR050358 all species →	Family	RSE1/DDB1/CFT1/CPSF1	Interproscan
IPR004871 all species →	Domain	Cleavage/polyadenylation specificity factor, A subunit, C-terminal	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10644 all species →	DNA REPAIR/RNA PROCESSING CPSF FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005847 all species →	Cellular Component	mRNA cleavage and polyadenylation specificity factor complex	Interproscan
GO:0006378 all species →	Biological Process	obsolete mRNA polyadenylation	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSQPTP00000060801.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.