Gene detail

Detailed information of ENSQPTP00000061395.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031572891.1, tripartite motif-containing protein 2-like [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

Transcript

ENSQPTT00000072314

CCACTCAAAGATTCCGAGAAACGCCTGCTGCTAGCCGTCACACATCCCTTCCCCACTATATTGGATTGCGGATGATGTCTTGCTGATATCAACTTAATTCGGTTTGTCGAGTGATGCGTTTAACCAATCAAGATAATACAAAACTAAATCAATCTTAATTGTATAtctgttttgaaaatttaacaaaaacaaaaagtgaTTGCCATGTAACTTCGATCGACGTCTATCATGTCTCCAAACATCAAGCAGACTCGGATACGTTGTTTACGAATGCTTTCGACTATGTTATAAAATTCACAATGGCTACGGCTTCTAATCATTATTCTCGAGTCATCAGCGAAGAGTTGTTATGTCCTGTCTGTCTGGAGGAACTCAAGGAGCCTAAGTTTTTAGCCTGTGCGCACAATATCTGCAAGGAGTGTCTTGAACAGATGGTGGGAAGGAATGGCAGGGAAGTCAGATGTCCAGTGTGTCGGAGAAGCATTGATATCCCTGAAGGTGGTGTGTCTTGTATTCCCACTAACGCAGTCTTAGTTCGACTCATTGAAGCTACACCAGGACGAAAAGAAAGGTTAGAAATCCAACTGTCTCTCGAGAGGGCGAAACCAGTTGTAAGAACTATGACAATAAAGATTTCCGACCTCGATAAAGTATTAACAGACTTGACTGTCAATGTTGATAAGGTCGAGAAGGAGATTCATGACAAAGCTGATCAGTTAGTAGAGGCtatcagaaaacaagaaacgaGTCTTTGTTCGGAAGTCGAAGAGTTTTATGGCAGGAAACAAGACATGATAAACAAACGGAAGAGTACTCTCTTCAAGCTGCATTCCAATGCACTGAATAGTGTTAACCTTGCGGAAGCTATTCTCAAGCAGAACGATGCTATTGAGATAGGTGAGATTACAACTGCTCTTGTACAGCAATTGGATGAAGTCAGTCTGTTAAATCTAGAAGAACCAGCAGATACATCCACATACGATGAAAGACTTGTATTTTCCATGAATACAGAAGCTACTTGTGAAAAGattcttgaaaataaaaaatttggtAAAGTTAGTAAAAACTTCCTCAAGGCTCAATCAAGACCTTCCTCGACGGTATCAAGTATAGATTGGTCCCAATCAGGTCAAGTATTACACAAACTTGGCCACAAGGGAAGTAAAAAGGGCTCCTTTAAGGGTCCAGCTGGGGTGTCTACAAATGAATTTGAAGAAATTGCAGTCAGTGACTTTTTTAACAATCGCATACAAGTTTTTGACTCAAGACTGAAGTTCCAATTTGAGTTTGGGAAGAAAGGTATTGACAATGGTCAATTCCAGGGTCCAACTGGAGTTGCTTACACCTcctataataatataatagtgTTTGACAGCAAGAATAGTAGAGTTCAAATATTCAACAGAAATGGTGAATTTGTGAGTAAGTTTGGCCAACAAGGAAGTGGTCCAGGTGATTTTGGTCAAAGTGGGACACTCTCAGTCGATAAATCAGGGGACATTATTGTAACCGATTCTGATAACAATAGAGTACAGGTGTTTTCTAACAATGGAGTATTCAAGTTCCAGTTTGGTGGCAGAGGTACCGAAGGATTTGATAACCCTTTGGATACCATTGCCATTGACAACGAGTATTTCACAACAGACAGTGGTAATTACTGCATCAAAGTGTTTAACGCCGAGGGTCAATATGTCAGGCAGTTTGGTCGGCaaggtgctggtgctggtgcatTTCAGTGTCCAAGGGGATTGGCTGTTGATTATATTAATGAGCTCGTTCTTGTCTGTGACAGTGAAAATCACAGTGTTCATATACTTAAGCCTGATGGAAGTTGTCTAGGCAAGTTCCCTACTAAAAAGATTCCAGTGGCACTAGCAATATTCCAGAAGTACTACCTTCTAGTTTGTTCATATCACAGTAATCGTGTTCAACTGATCTCCTACGCTTGATTAATGAGTTATTTTTATGCAGATTAAAAAACATAATAAGTCCTGCATTTTTGAGGCATTATGAAGATGTTAATCtaaaggaaaaatattttgcatattttttaattgataTTTGCAGTGATTTTTAGAACTCTTAATTTAGAggtaaaaatttatatttagtataaTTATGTGCTTACCTTGGGGATATCCTGGGGGTAATTTAGTTTTGTGCGATGTTTTAACGACCTTCAGTGATACTCTATGAAATGATGCATGGAAAATGTGAAAAATCACAAAAGTGAAGTCACAGCTAAAAGGACATCACACAAGTtatttaatagataattactgaggcacgcagcattcgtaggtataatgcaggcaGCTGCGTGCCAAAGTGATTATctagtataattattgttcttatcaaaatccaattgttttctttctagcttgtttatcatagaaacaaagccaataatgaatgaactaaatatgtctgattttcctctatgcattcgttgggataatgcagactgaaaacaatggattttgataagatcagtaattatTACAGTGTGAATTGCAAAACCGAgggcacctagaaatatttcaagaatgttcaatagccaatcaaaaccatTTTTCCCCATTATCTTGTAGATAGAAAGTCAATTCTGATTGAGCaaagaatagaacattcctggaatatttctaggtgcccaCGGTTTTTCGATTCACTGTAAAAGTCTATTAGTTTAATATTGAGACATTCGTTACTGCTTTACTTCAAGCTAACAAATCCATATTATTGTTATCTACTCTTTAGTTCTTGCTGTTAGCATTTTTTGTCTGTAAGATGTATACCCACTTTTCCTATTGGTCTTGATATGCCTTGTTTTACAGCGTTTGCCTTTATTAACTTCCTTTTTGAAACATTGTATGTGTACACTTGGATACTTTAAgataaaaatgcaaagaatCATTCCCACAAtatgatttttatatttttgtatt

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q810I1	E3 ubiquitin-protein ligase TRIM50 OS=Rattus norvegicus OX=10116 GN=Trim50 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010586 (this species only)
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17170 all species →	DUF5128	6-bladed beta-propeller	Repeat	Interproscan
PF01436 all species →	NHL	NHL repeat	Repeat	Interproscan
PF13445 all species →	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR001258 all species →	Repeat	NHL repeat	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR027370 all species →	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR050952 all species →	Family	Tripartite Motif and NHL Repeat Containing E3 Ligases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24104 all species →	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSQPTP00000061395.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.