Detailed information of ENSQPTP00000061580.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031553691.1, ATP-dependent RNA helicase DEAH12, chloroplastic-like [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

 Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
F4KGU4ATP-dependent RNA helicase DEAH12, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g10370 PE=3 SV=1
P0CE10ATP-dependent RNA helicase DEAH11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g01020 PE=3 SV=1
Q54F05ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum OX=44689 GN=dhx8 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000316 (this species only)
Ubiquitin familyE3|E3 activity|RBR · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07717
all species →
OB_NTP_bindOligonucleotide/oligosaccharide-binding (OB)-foldDomainInterproscan
PF00271
all species →
Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF01485
all species →
IBRIBR domain, a half RING-finger domainDomainInterproscan
PF00270
all species →
DEADDEAD/DEAH box helicaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036612
all species →
Homologous_superfamilyK Homology domain, type 1 superfamilyInterproscan
IPR027417
all species →
Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR001841
all species →
DomainZinc finger, RING-typeInterproscan
IPR035979
all species →
Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR007502
all species →
DomainHelicase-associated domainInterproscan
IPR001650
all species →
DomainHelicase, C-terminal domain-likeInterproscan
IPR002867
all species →
DomainIBR domainInterproscan
IPR011709
all species →
DomainDEAD-box helicase, OB foldInterproscan
IPR044066
all species →
DomainTRIAD supradomainInterproscan
IPR014001
all species →
DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR002464
all species →
Conserved_siteDNA/RNA helicase, ATP-dependent, DEAH-box type, conserved siteInterproscan
IPR011545
all species →
DomainDEAD/DEAH box helicase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR18934
all species →
ATP-DEPENDENT RNA HELICASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003723
all species →
Molecular FunctionRNA bindingInterproscan
GO:0003676
all species →
Molecular Functionnucleic acid bindingInterproscan
GO:0008270
all species →
Molecular Functionzinc ion bindingInterproscan
GO:0004386
all species →
Molecular Functionhelicase activityInterproscan
GO:0005622
all species →
Cellular Componentintracellular anatomical structureInterproscan
GO:0005524
all species →
Molecular FunctionATP bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K12818DHX8, PRP22; ATP-dependent RNA helicase DHX8/PRP22EC:5.6.2.6
Spliceosomeko03041deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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