Gene detail

Detailed information of ENSQPTP00000062364.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031573376.1, tRNA-splicing ligase RtcB homolog [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

Transcript

ENSQPTT00000073423

GGACAAAAGTAAAAGactattaaaaagaaaatcctTTTGGAAATAGGCTTTCAACAAACTGAGTTTATAATGCCTTCACGGTCTTTTAAGGAAGAGAGTGAATATCTAGAGCGCATTTCTGATTGTGCATATCTTATCAAGAAAGGGTTCGTTCCAAACATGAAGGTGCCTGGTAAATTCTACATAAATGATGCACTAGAAAAGATGATGTTTGATGAGCTACGGCATTGGTGTGGCACTGATGTTGGAGGATTCCTTCCTGGTGTTAAACAGATTGCTAATGTTGCTGCTTTACCAGGAATAGTTGGGCATTCTATTGGTCTACCAGATGTGCATTCAGGATATGGCTTTGCTATAGGCAACATGGCTGCATTTGACATGTCTAAACCAGAAGCAGTTGTCTCtccagGTGGTGTAGGGTTTGATATCAATTGTGGTGTTCGATTGCTGAGAACAAACCTTGATGAAAAAGATGTCCAACCAGTTAAAGAAAGACTAGCTCAGGCTTTATTTGATCATATTCCTGTGGGAGTTGGTTCTAAAGGAGTCATTCCAATGGGACCAAAAGACCTAGAGGAGGCGCTAGAAATGGGTATGGACTGGTCATTAAGAGAAGGCTACGCATGGGCAGAGGATAAAGAACACTGTGAGGAGTATGGGAGAATGTTACAAGCAGACACAAGTAAAGTCAGCACGAAGGCCAAGAAGAGAGGACTGCCACAGCTTGGCACTCTTGGCGCTGGAAATCATTATGCTGAAATACAAGTAGTAGACAAAATATTTGATGAATTTGCTGCGAAGAAAATGGGAATAGACCACACAGGACAGGTATGTTTAATGATTCATAGTGGGAGCAGAGGTCTGGGCCATCAGGTAGCCACAGATGCATTAGTTGCGATGGAGAAAGCAATGAAGAGAGACAAGATTGAAGTAAATGACAGACAGCTTGCCTGTGCCCACATCAAGTCTCAAGAAGGACAAGATTACTTAAAAGCCATGGCAGCGGCTGCtaattttgcatgggttaatCGTTCTAGCATGACATTCCTCTCAAGACAGGCATTTGCAAAGATTTTCAAGAGCACGCCAGATGATCTGGACATGCATGTCATCTATGACGTGTCACACAACATCGCGAAAGTTGAGGAACATTTCTTTGAAGGAAAGCAAACACAGCTACTTGTTCATAGGAAGGGATCTACGAGAGCATTCCCTCCTCATCATCCTTTAATCCCAGTTGATTATCAGCTCACAGGTCAACCAGTACTGATTGGAGGGACTATGGGCACAAGCAGCTATGTTCTTACTGGGACTGATAAAGGAATGGATGAAACATTTGGGTCTACATGCCATGGGGCTgGGCGAGCACTTTCTAGAGCAAAATCTAGGAGGACATTTGATTATCAAGATGTGCTGGCCAGTCTTCAACAGAAGGGCATCTCCATCAGAGTAGCATCACCAAAGCTTGTTATGGAAGAGGCTCCAGAGTCTTACAAAGATGTTACGAGCGTGGTCGACACTTGTCAGATGGCAGGAATCAGTAAGAAAGCTATCCGATTAAGGCCGATTGCTGTTATCAAGGGGTGAACGAACAATGCTACAGATTGTCAATAAACACAAGAATGCATCAAGCTGGCAACATGTCAACAGAGATAGGGGAGTAATTGCATGGATCTTCGAGGaataaacaacaacaccatcaGCAACAAAAAATGTGAAGCTGAACATCGTGTTACTAACACCTCATAGCCACAATTCAATAAACCGTTTTACCGATACGGAGGCTATCTTAAAACTATAGAATGCCGGGGGGGGGACTAATAGAAGATTTATTATCCATGCCGaggttaaagaaaaaaattgggtcGAGTTGTCATCGtaatgcattgtggggctgtttgtGGGACAAATTCCCAAGATGGCGTCTTCCTGTGGTACATGGTCTTCCGGTTGTATGGGCGTGCATGCGGTTTCTTAAAAGTCGCGCGGACTCATAAGTAAACAATATGGCGGATGAGACACGagtaaaaacgtctgcgcatgctctgaatccgtatgcaaattagtcaaaaacatgtaaatttgactttcgaACATgtctgataaattggacttcataaaatgccaaaacttagtgtccatgcttgaaacttaaggctaattctttcatattgtgtttgttaatgcagtatcttggtctgacaaaagtatactctagaacgtttttgtatacttggagaaaacaaacatttattttctcactcaaactctccAAAATTCTTAGAGAACGTGCTGAAGTGcacgcaaacgtttttctctggtGTCGGCGGATGatacaaataaaattttatgTACGCCGCCATCTTTGATACTCGAGCCCACGCTATTTTTCGCGGAAAACCGTATTCGTCATCAAACGTCAgtaccacaggaagaccagtCAACAAATTTATGTCTGCCGTCACGGCTCCCTTGGACTGTTCAGCCGCCAGGGTGTCTTATTTAACTTAACGTCTTTCAATATAACTTATATTTAACGATTATTCGccaaaggcgaagtgaatatcggtaCGAGGTAGATATTca

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7RKF6	RNA-splicing ligase RtcB homolog OS=Nematostella vectensis OX=45351 GN=v1g198406 PE=3 SV=1
Q5E9T9	RNA-splicing ligase RtcB homolog OS=Bos taurus OX=9913 GN=RTCB PE=2 SV=1
Q9Y3I0	RNA-splicing ligase RtcB homolog OS=Homo sapiens OX=9606 GN=RTCB PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003319 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01139 all species →	RtcB	tRNA-splicing ligase RtcB	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001233 all species →	Family	RNA-splicing ligase, RtcB	Interproscan
IPR036025 all species →	Homologous_superfamily	tRNA-splicing ligase RtcB-like superfamily	Interproscan
IPR027513 all species →	Family	RNA-splicing ligase RtcB homologue, eukaryotic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11118 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0008452 all species →	Molecular Function	RNA ligase activity	Interproscan
GO:0000971 all species →	Biological Process	obsolete tRNA exon ligation utilizing 2',3' cyclic phosphate of 5'-exon as source of linkage phosphate	Interproscan
GO:0003972 all species →	Molecular Function	RNA ligase (ATP) activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0072669 all species →	Cellular Component	tRNA-splicing ligase complex	Interproscan
GO:0006388 all species →	Biological Process	tRNA splicing, via endonucleolytic cleavage and ligation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase)	EC:6.5.1.8	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.