Gene detail

Detailed information of ENSQPTP00000062593.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031571778.1, putative deoxyribonuclease TATDN2 [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

Transcript

ENSQPTT00000073678

ggcactttaacaGACTCCTGTGGTCTATTGACTCGTGTTGCCACTACTTCAGTTATCAATTCTAGATTAGAGTGCTTTTTCTGCGCGACCCAGAAAGTTCTAGACGCAAAGAAATTTCCCGTTCTAGATTCAGTTGGCTGCCatctttcaaaaataattttcgaaaAAGcgATATTAATTCAAGGGTTTGAAGTTCAGAGAAAATTAGCCCAACATGGCCGATCATGCCAGGAAGTGCTTTGGTTGCGGAAAAACAGGACACTTGAAAAAAGACTGCCCAAACAAACAACGTATTAGTCTCTCGAATATCAAATGTTTTTCCTGTGGAAAACATGGCCATATGAAGAGGGAATGTCCAAGTTTTGCTTCAGGCGAAGGGGCAGTTGATTCAAGCGAGGGCTGCTCCCAATTTCAAGGGAGCTTCAAGAAGCTACAGCTCTATCCAAAATGTCACACGAATTTTATTGATACGCATTGTCATCTGGAGTATGTATTTGATAGATTCAGGCATAGTAGGGGTTTTGAGGAGTTCAGAGCAATTCATCCATTCCCAGAATTCTTTGAAGGGTGTGTGACAACTTTCTGTGACCCTGCTGCTTTCTCGGCATTTGGCATGTGGGAGGAGCTTATCATTCAGGATAGAGTATGGGGAGCATTTGGCTGCCATCCACATAATGCAGAATACTATACAGAGTCTTTAGAGGCAAAGATAATCCAGTGTCTAGAGAATCCCAAGGCTGTTGCTCTGGGTGAGACTGGTTTGGATTATTCCAAAAGGTCTCGCTCAAAACCAGAAATACAGAAAGaagttttcaaaaaacaaGCTACTTGGGCAGTCACTCTGGGGAAACCACTGGTTGTCCACTGTCGTGAAGCAGAAGCCGATACACTTAAAATTCTTCAGGAAACAGTGCCAGCCCACTGGAAGATACATTTACATTGCTTTACAGGCACTTCTGCATTTGCTTCAAAATTCTTGAATGCTTTTCCTAATCTTTTCATTGGGATAGCTGGGTTGGTTACCTTTGCTAAAGCTGCTGAAATTCACGAGTTAGCATTTGACATCCCACTGAACAGAATTGTTCTAGAAACTGACGCGCCTTATTTTGTACCTAATGCTGTTGCCAATAGCAACAAGTGGAGTCATCCTGGAATGGCTATCTATGTTGCCGAAAAAATTGCTGAAATCAAAAAGGTCCCTATTGATAATGTCCTGGAGGCTACCAGAAGCAACACCTGGCAGTTGTATGGTATTTAGTTTGGAAATCTATAAGAGATAGATTGGTGGTCAATAATTATGTGTATCCcaaccctcccctcccatcCAGGTCTTTTTTTATCAGTAACTTTCCctgtaatttcattttttactcCATATGCAAATACTGTCATGAATTTCTTGGGGGTTCACGCCCCCTCCATTGAATCAGGCATTTTGCttcaattttcaaattattttagtAAGGGAACTTGTAGAAATTATCACAAAAAGTTATTTTGGATCTTGACACCATTAGGAATAATTGCTCTGTATTCTTAACGCATTGATGGAACTTTTAATTTACTAACAACAATCACAGGAAATGTCATTTATACAGTAAACTACATTTTTTATGTCAAtatttttcacttttattcCAATGATTCAATTATACACTTACACTTTTTGTCCGAAACGTTTTTATGTCATTCAGCAATTCTATATTCATAGTTTAGTCCAAGAAAGGACTGCCCCAATCAACTCAGCGTCAActcaaaattcaaaacttttttatGTCATTCAGCACTTCTATATTTCTATTTGAGTCCAACAAAGGACTGACTTGAGAATCAACTCAAAATCGAAGACTTTTCAGTTGAATGCATATTACTTAAAGAGATAAATACTGAGACATTTTaatttaaggaatataaaaaacGCTttcatgtctctgtactgtgatataaacacacactgggagctgtagagcacaaGACAAGCAAGCTTACAGCTTTAGAAATACAAGGCATAGCCCAgtgtttctcttgcttttcAAGTGCTGTGCAGCTCCCGCAGTGTTTATATGACAATATAGAGACCTAAGCAGccattttatattgctttcataaactaaatatttttggagaactttgtgcaaatttgtctctgtcctctgatataagcacggtagccagccaatcagcatatgcattatatttcaaatatttgtacATGTATACTATAATTcctaattaatattttaaactaAAGTGTTTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q93075	3'-5' RNA nuclease TATDN2 OS=Homo sapiens OX=9606 GN=TATDN2 PE=1 SV=2
P0AFQ9	Uncharacterized metal-dependent hydrolase YcfH OS=Escherichia coli O157:H7 OX=83334 GN=ycfH PE=3 SV=1
P0AFQ8	Uncharacterized metal-dependent hydrolase YcfH OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=ycfH PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008355 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00098 all species →	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF01026 all species →	TatD_DNase	TatD related DNase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001130 all species →	Family	3'-5' ssDNA/RNA exonuclease TatD-like	Interproscan
IPR032466 all species →	Homologous_superfamily	Metal-dependent hydrolase	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR018228 all species →	Conserved_site	Deoxyribonuclease, TatD-related, conserved site	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46363 all species →	DEOXYRIBONUCLEASE TATDN2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016788 all species →	Molecular Function	hydrolase activity, acting on ester bonds	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03424	tatD; TatD DNase family protein	EC:3.1.21.-	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.